Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2046 ATGGGGAGCGACAGTGAAGGAGAAAAGTCGGTGCAGAAGGAGAAGGAGAGGAAGAAGCTGCTTGCGGTGGCTCCCATTGCTAAACCCCTTGCTGGGAAGAAGCTTTGCAAGCGAACACTCAAGCTTGTTCGTAGAGCTGCTGAACACAAATGCTTGAAAAGGGGAGTTAAGGAGGTGGTTAAAAGTATAAGGAGAGGTCACAAAGGGTTGTGTGTTATAGCTGGAAACATATCCCCGATTGATGTCATCACTCATGTTCCTGTCTTGTGTGAAGAATCTGACGTTCCATATGTGTATGTCACGTCTAAAGAAGACCTTGCCAGTGCAGGAGCAACAAAGAGGCCTACTTGCTGTGTTTTGGTGCTGACCAAGCCTGCAAAGGGAGAAATGGAGAAAGGGGAACAAGAGAAACTAAAGTCAGATTATGATCAAGTTGTGTCAGATGTTACCGAGATTACAGCTTCACTTTTTTGA 474 0.4578 MGSDSEGEKSVQKEKERKKLLAVAPIAKPLAGKKLCKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPVLCEESDVPYVYVTSKEDLASAGATKRPTCCVLVLTKPAKGEMEKGEQEKLKSDYDQVVSDVTEITASLF* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2046 157 PRINTS High mobility group-like nuclear protein signature 25 38 IPR002415 GO:0003723|GO:0005730
Lja4g2046 157 PRINTS High mobility group-like nuclear protein signature 38 53 IPR002415 GO:0003723|GO:0005730
Lja4g2046 157 PRINTS High mobility group-like nuclear protein signature 55 65 IPR002415 GO:0003723|GO:0005730
Lja4g2046 157 PRINTS High mobility group-like nuclear protein signature 99 111 IPR002415 GO:0003723|GO:0005730
Lja4g2046 157 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 156 - -
Lja4g2046 157 Gene3D - 17 152 IPR029064 -
Lja4g2046 157 PRINTS Ribosomal protein L7A/RS6 family signature 52 66 IPR018492 -
Lja4g2046 157 PRINTS Ribosomal protein L7A/RS6 family signature 71 84 IPR018492 -
Lja4g2046 157 PRINTS Ribosomal protein L7A/RS6 family signature 87 97 IPR018492 -
Lja4g2046 157 PRINTS Ribosomal protein L7A/RS6 family signature 97 111 IPR018492 -
Lja4g2046 157 SUPERFAMILY L30e-like 18 127 IPR029064 -
Lja4g2046 157 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 40 124 IPR004038 -
Lja4g2046 157 PANTHER - 2 156 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2046 52 124 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 31.507 1.08e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2046 K11129 - gmx:100305515 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2046 4 21848955 21850652 Lja4g2046 4 21848955 21850652 ECH