Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2028 ATGTTCCTCCATGCTAAAATCCAACCCCTTTCTCCTACTCTCATGGAAAACAAAGACAAATCAACATCTCCACCCCAATCTGAAAATCAAAACAAGAATCTCCCTTTGATGCCTAATGAAATAGATAGATCCTATGAGAATAGAGAGAAGAAGAAGATTCCCCAAACAGAAAACAAGTGTCAGCAGAAAAAGTTTCTAGGGGTGAGACAAAGGCCTTCAGGAAGATGGATTGCTGAAATCAAAGACTCCTCATCACAGAAGCTAAGGGTGTGGTTAGGAACCTTTGACAGAGCAGTGGAAGCTGCTCTGGCTTATGACTCTGCAGCAAGGCTTCTCAGAGGAAAAAATGCCAAAACAAACTTTCCAAACACTCATCATGAGGAAGATTACTACTGCAGCAGCATTTTGGGGAAGAATCCAAGGGCTTACCAGCTTCTTCATCAGCATGCAGTCATGAAGAAGAACCACCATGCACTAATTTCCTCATCTGTTTTTTCTTCCATCCCTTGGAAAAATCAGATCATGATGAGAGGAGAAGAACATGATGCACTTGTTGAGGAAACTATTGTTTGCTCTGTTGCCTCTGTTAATCCTGAAGAAGGGTCTACAGGGAGTAGTGGAATTTCATTTGGAAGTTCAAAGGTTTACTCTTCTGTTGTTGTAGCTCCTTCTTTTAGTGCCTCGCAGTGTCAAACATGA 699 0.4177 MFLHAKIQPLSPTLMENKDKSTSPPQSENQNKNLPLMPNEIDRSYENREKKKIPQTENKCQQKKFLGVRQRPSGRWIAEIKDSSSQKLRVWLGTFDRAVEAALAYDSAARLLRGKNAKTNFPNTHHEEDYYCSSILGKNPRAYQLLHQHAVMKKNHHALISSSVFSSIPWKNQIMMRGEEHDALVEETIVCSVASVNPEEGSTGSSGISFGSSKVYSSVVVAPSFSASQCQT* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2028 232 PRINTS Ethylene responsive element binding protein signature 104 124 IPR001471 GO:0003700|GO:0006355
Lja4g2028 232 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Lja4g2028 232 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Lja4g2028 232 MobiDBLite consensus disorder prediction 42 58 - -
Lja4g2028 232 Gene3D AP2/ERF domain 63 123 IPR036955 GO:0003700|GO:0006355
Lja4g2028 232 ProSiteProfiles AP2/ERF domain profile. 64 122 IPR001471 GO:0003700|GO:0006355
Lja4g2028 232 CDD AP2 63 124 IPR001471 GO:0003700|GO:0006355
Lja4g2028 232 MobiDBLite consensus disorder prediction 1 58 - -
Lja4g2028 232 MobiDBLite consensus disorder prediction 14 37 - -
Lja4g2028 232 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Lja4g2028 232 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 15 232 - -
Lja4g2028 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 15 232 - -
Lja4g2028 232 SMART rav1_2 64 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2028 Lja-Chr4 21386668 21387593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2028 51 123 AP2-EREBP Transcription Factor Family AT5G19790 60.274 1.20e-23 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g2028 AP2 1.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2028 K09286 - gmx:100807374 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2028 4 21386668 21387593 Lja4g2028 4 21386668 21387593 ECH