Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2026 ATGGCTGGGGGAAGGAGAAGGAAGCATCACTTTAGTAGAATCCATGCATTCTCATGTGGGAAAGCTTCAATGAAAGATGAGCATTCACTCATTGGAGGACCTGGTTTCTCAAGGAAAGTGTATTGCAATGACCCTGATCGTGCTTATTCAAGTCTTCAGTATTATGGTGACAATTATGTGAGTACTACTAAGTATACGTTGGCCACGTTTCTTCCCAAGTCCTTGTTTGAGCAGTTCAGGAGGGTTGCAAACTTTTACTTCCTTGTCTGTGCTATTTTGTCTTTCCTCCCTGTCTCTCCTTACTCTGCCTTCAGCAATGTTTTCCCTCTTGTGGTTGTGGTTGCTGCTACAATGATTAAGGAGTTTATTGAGGATTTCCAGAGGAAAAAACAGGATATAGAAATGAATAACAGAAAAGTTAAATTACATCAAGGAGGTGGTGTTTTTGACTATTCTAAATGGAGGGATTTGAAAGCTGGAGACATAGTGAAGGTGGAAAAAGATGAGTTCTTCCCAGCTGATCTCATCTTGCTTTCATCAAACTATGATGATGCAATTTGCTATGTTGAGACAATGAATCTTGATGGAGAAACGAATCTTAAACTGAAACAAGCACTGGAAGGAACTTCGAAGTTGCAAGAAGACTCAAGTTTTCAACATTTCAAGGCTGTCATCACATGTGAAGATCCTAATGCAAATCTGTACACATTTATAGGCAGTTTGGAGCTCGAGGATCAACAGTTTCCCCTTGCACCTCAGCAGCTACTTCTTAGGGACTCTAAGCTGAGAAACACAGATTTCGTTTATGGTGTGGTGATATTTACTGGTCATGATACAAAGGTTATGCAGAATTCAACAGATCCTCCGTCCAAGAGAAGCAAAATTGAGAAACGAATGGACAAGGTTATCTACTGCTTGTTCTTCGTCCTATTTTTGGTTTCTCTCATCGGGTCCATATTCTTTGGGATATGGACAAAGAAGGACCTTAAAAATGGAAGAATGAAGAGATGGTACCTTAGGCCAGATGATTCCACAGTTTACTATGATCCAACTCAAGCAGAAGCCGCAGCAATTTTGCATTTCTTGACAGCACTTATGTTGTATGGCTACTTCATTCCAATTTCCTTGTACGTCTCCATTGAAATTGTGAAAGTTCTCCAAAGCATTTTCATCAACCAGGATGTGCACATGTATTATGCGGAAACTGACAAGCCAGCACATGCTCGGACATCAAATTTGAATGAAGAACTTGGACAAGTTGATACCATACTTTCAGATAAAACAGGAACTTTGACTTGCAATTCTATGGAATTTATCAAGTGTTCTATTGCTGGGACTGCTTATGGAAGAGGAGTAACAGAAGTTGAGAGAGCTTTCTCTAAGAGGAGAGGACCTTATGGTCATCAGTTGAATAATGACAACAATATTGTTGAATCAAAGTCATCTATTAAAGGGTTTAACTTTATGGATGAAAGGATCATGAATGGAAATTGGGTAAAGGAGTCCAATGCTAAGGCAATCCAGAACTTCCTACGGTTGTTGGCTGTATGCCATACTGCAATACCTGACATTGATGAAGAAACTGGCAAGGTTTCATATGAAGCTGAATCACCTGATGAGGCATCTTTCGTGATTGCAGCCAGAGAACTTGGTTTTGAATTCTATGAAAGGACCCATACAGCTATTTCACTGCGTGAATTAGACCCCAAGTCTGGCAATAAAACTGAAAGGTCTTACAAACTTCTAAATATATTGGAGTTTAGTAGTGCAAGAAAGAGGATGTCTGTCATTGTAAGAGATGAGGATGGGAAACTACTACTACTCAGCAAAGGCGCTGACAGTGTCATGTTTGATCTACTTGCAAAGAATGGAAGGGAGTTTGAAGAGAAGACTAAGCAGCATATTAGTGAGTATGCTGATTCTGGTTTGAGGACCTTGATACTCGCATATCGTGAACTTCATGAGGATGAGTACAATCAATTTAATAAAGAGTTAACAGAGGCCAAGAACTTAGTGAGTGCAGATCAGGAGCAGATTGTAGAGAATATATTACAACATATGGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTACAAGACGGGGTTCCTGAATGTATTGACAAACTAGCGCAGGCTGGGATTAAGCTATGGGTTTTGACTGGTGATAAAATGGAGACAGCAATTAATATTGGATTCGCTTGTAGTTTACTCAGACAAGGAATGAGGCAAATTATAATTAGCTCAGATACTCCTGAACACAAATCACTGGAGAAAATGGAGGACAAGTCTGCTGCTGAAGCGGCAATTAAGGCAAGTGTAGTTCAACAATTAAGGGAGGCAAAGACATTAATTTCTACCTCAGATGAAAACCCTGAGGCGTTAGCTCTGATCATTGATGGGAAGTCTCTTACTTATGCACTTGAAGATGATGTGAAGGACTTGTTTCTTGAACTTGCAATTGGCTGTGCATCTGTTATATGCTGTCGTTCATCTCCCAAGCAAAAAGCACTTGTTACAAGACTGGTGAAGAGCAGAACTGGTAGTACAACTCTAGCTATTGGAGATGGGGCAAATGATGTTGGAATGCTCCAAGAAGCAGACATTGGGATTGGTATCAGTGGTGTTGAAGGAATGCAGGCTGTTATGTCAAGTGATATTGCAATTGCCCAATTTCGGTTTCTGGAGCGCTTACTTCTCGTGCATGGACATTGGTGTTACAGAAGAATCTCATCAATGATCTGCTACTTCTTTTACAAGAATATCACCTTTGGCTTCACTCTCTTCTTCTTTGAGATGTATGCCTCATTCTCAGGGCAATCTGCATACAATGACTGGTTCATGTCACTATATAATGTATTCTTCACCTCACTTCCAGTAATTGCTTTGGGAGTGTTTGACCAGGATGTCTCTTCTAAATTATGTTTCAAGTTTCCATTATTATATCAAGAAGGAGTGCAAAACATCCTCTTTAGCTGGAAACGAATCTTTGGTTGGGCAATCAACGGGGTCTCAAGTTCTGCCATCATATTCTTCTTTTGCATTCGCGCTTTCAAGCACCAAGCATTCCGCGAAGGTGGTGAAGTTGTTGGACTGGAAATTCTTGGTGCCACCTTGTACACTTGTGTTGTGTGGGTGGTGAATTGCCAAATGGCCTTATCTATCAGTTACTTCACTTATATACAACATTTTGTCATCTGGGGAAGCATTCTGTTATGGTATGTGTTCCTCATGGCATATGGAGCCATAGACCCCACCCTCTCCACCACTGCCTATAAGGTCTTCACTGAAGCTCTTGCACCATCTCCATCTTATTGGGTTGTCACTTTGCTTGTTGTTGTTGCTGCCCTCCTTCCATATTTCGCTTATTCTTCCATCCAAATGCGGTTCTTCCCCATGTATCATCAAATGATTCAGTGGATAAGAAAGGATGGCCAGACAAGTGATCCGGAATATTGTGATATGGTGCGACAGAGATCAATACGACACACAACAGTTGGATTCACAGCGCGTTTGGAAGCATCTAGACGTTTTGAAGCATCCAAACGTCATGAACCATACATAGCACCTTTTCAAATTCATGGGAGGTCTGCGAGTCAATAA 3615 0.408 MAGGRRRKHHFSRIHAFSCGKASMKDEHSLIGGPGFSRKVYCNDPDRAYSSLQYYGDNYVSTTKYTLATFLPKSLFEQFRRVANFYFLVCAILSFLPVSPYSAFSNVFPLVVVVAATMIKEFIEDFQRKKQDIEMNNRKVKLHQGGGVFDYSKWRDLKAGDIVKVEKDEFFPADLILLSSNYDDAICYVETMNLDGETNLKLKQALEGTSKLQEDSSFQHFKAVITCEDPNANLYTFIGSLELEDQQFPLAPQQLLLRDSKLRNTDFVYGVVIFTGHDTKVMQNSTDPPSKRSKIEKRMDKVIYCLFFVLFLVSLIGSIFFGIWTKKDLKNGRMKRWYLRPDDSTVYYDPTQAEAAAILHFLTALMLYGYFIPISLYVSIEIVKVLQSIFINQDVHMYYAETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGTAYGRGVTEVERAFSKRRGPYGHQLNNDNNIVESKSSIKGFNFMDERIMNGNWVKESNAKAIQNFLRLLAVCHTAIPDIDEETGKVSYEAESPDEASFVIAARELGFEFYERTHTAISLRELDPKSGNKTERSYKLLNILEFSSARKRMSVIVRDEDGKLLLLSKGADSVMFDLLAKNGREFEEKTKQHISEYADSGLRTLILAYRELHEDEYNQFNKELTEAKNLVSADQEQIVENILQHMEKDLILLGATAVEDKLQDGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMRQIIISSDTPEHKSLEKMEDKSAAEAAIKASVVQQLREAKTLISTSDENPEALALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKALVTRLVKSRTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNITFGFTLFFFEMYASFSGQSAYNDWFMSLYNVFFTSLPVIALGVFDQDVSSKLCFKFPLLYQEGVQNILFSWKRIFGWAINGVSSSAIIFFFCIRAFKHQAFREGGEVVGLEILGATLYTCVVWVVNCQMALSISYFTYIQHFVIWGSILLWYVFLMAYGAIDPTLSTTAYKVFTEALAPSPSYWVVTLLVVVAALLPYFAYSSIQMRFFPMYHQMIQWIRKDGQTSDPEYCDMVRQRSIRHTTVGFTARLEASRRFEASKRHEPYIAPFQIHGRSASQ* 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2026 1204 Pfam Phospholipid-translocating ATPase N-terminal 40 105 IPR032631 -
Lja4g2026 1204 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1181 - -
Lja4g2026 1204 Gene3D - 536 669 IPR023299 GO:0000166
Lja4g2026 1204 SUPERFAMILY Calcium ATPase, transduction domain A 146 284 IPR008250 -
Lja4g2026 1204 Coils Coil 651 678 - -
Lja4g2026 1204 CDD P-type_ATPase_APLT_Dnf-like 57 1018 - -
Lja4g2026 1204 Pfam Cation transport ATPase (P-type) 526 618 - -
Lja4g2026 1204 SFLD p-type atpase 406 909 IPR044492 -
Lja4g2026 1204 SUPERFAMILY HAD-like 419 913 IPR036412 -
Lja4g2026 1204 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 824 940 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja4g2026 1204 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1181 - -
Lja4g2026 1204 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Lja4g2026 1204 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 431 662 IPR023299 GO:0000166
Lja4g2026 1204 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 55 1143 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Lja4g2026 1204 SFLD Haloacid Dehalogenase 406 909 - -
Lja4g2026 1204 Gene3D - 116 286 - -
Lja4g2026 1204 Gene3D - 690 898 IPR023214 -
Lja4g2026 1204 PRINTS P-type cation-transporting ATPase superfamily signature 744 754 - -
Lja4g2026 1204 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Lja4g2026 1204 PRINTS P-type cation-transporting ATPase superfamily signature 858 877 - -
Lja4g2026 1204 Pfam Phospholipid-translocating P-type ATPase C-terminal 886 1136 IPR032630 -
Lja4g2026 1204 SUPERFAMILY Calcium ATPase, transmembrane domain M 46 1136 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2026 Lja-Chr4 21029584 21036080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2026 10 1191 Primary Pumps ATPases AT3G25610 69.924 0.0 1772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2026 K01530 K14802 gmx:100796405 2079.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5418 1 91425011 91432065 Lja4g2026 4 21029584 21036080 ECH
Lja4g2026 4 21029584 21036080 Lja4g2026 4 21029584 21036080 ECH