Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2024 ATGGAACCCATGGACATCGTTGGCAAATCAAAGGAAGATGCTTCGCTTCCCAAAGCAACAATGACCAAAATTATTAAAGAGATGTTACCTCCGGATGTTCGCGTAGCGAGAGATGCTCAAGATCTATTGATCGAGTGTTGTGTAGAGTTTATAAACCTCGTCTCATCGGAGTCCAATGAAGTCTGTAACAGAGAGGATAAACGAACGATTGCACCTGAGCACGTATTAAAGGCTCTAGAGGTTCTTGGATTCGGTGATTACATTGAAGAAGTTTATGCAGCATATGAACAACACAAGCTGGAGACCATGCAGGACTCTTTAAAAGGTGGTAAATGGAGCAATGTAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAACAGCAAAGGATGTTTGCAGAGGCGCGTGCTAGGATGAATGGTGGCGCCGTTCCTTCCAAGCAGCCAGATGCTGACCAAAGTTTAGATAGCTAA 471 0.4437 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREDKRTIAPEHVLKALEVLGFGDYIEEVYAAYEQHKLETMQDSLKGGKWSNVAEMTEEEALAEQQRMFAEARARMNGGAVPSKQPDADQSLDS* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2024 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Lja4g2024 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Lja4g2024 156 Gene3D Histone, subunit A 4 142 IPR009072 GO:0046982
Lja4g2024 156 MobiDBLite consensus disorder prediction 137 156 - -
Lja4g2024 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Lja4g2024 156 Coils Coil 115 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2024 Lja-Chr4 20992671 20996650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2024 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 84.416 2.82e-93 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja4g2024 CBFD_NFYB_HMF 3.9e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2024 K21751 - gmx:100807912 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2024 4 20992671 20996650 Lja4g2024 4 20992671 20996650 ECH