Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2021 ATGGCTGAACCAGAAAACAACCTTCAAACCTCACCAATGGCTGAAACAGAGACCAAAAAGAATAACAAGCACGACAAAAAAAGACCCCGAGATATTGCTAACGATGATCATGTAGAACAAGAAGAAGAAGAGAGTGATAATCACAGTGATATGGATGCAGAATCCTCGAAGAAGAAGAAGAATAAGGTGGAAGCGGAAGAGATAAATGAGAAGAACAACACCGGGTCTGGAATTATGACCACTGAGTCTTTTGCTTCTCTCGAACTCTCTCAACCTACTTGTAAAGCCATCATGGACATGGGATTTCAATGCATGACTCAGATTCAAGCTAGAGCAATTCCACCACTTCTTACTGGTAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTTTTAGTTCCTGCTGTGGAGCTGCTGCACAATGTTAAATTCACACCGCGTGATGGGGCTGGTGTTGTTGTAATATGCCCAACTAGAGAGCTTGCAATGCAGACACATGCTGTGGCGAAGGAGCTTCTTAAGTATCATTCACAAACTATTGGATTGGTCATGGGAGGTTCAGCTAGAAGAGCTGAAGCTGAGAGCATTGCTAAAGGGGTAAACCTTTTGATAGCAACTCCTGGTCGGCTTCTAGATCAACTTCAAAATACAAAGAGGTTCATATATAATAACTTGAAGTGCCTCATCATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGATGAAATGAGGCAGATTATTAAGATCCTCCCAAAGAACAGGCAAACCGCTTTATTTTCGGCTACACAAACAAAGAAGGTTGAAGATCTTGCCCGCTTGTCATTTCAAACAACTCCTATCTATATTGATGTAGATGATGGGAGAACCAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTCGTGTTCCCTGTGACAAGCGATTTATTGTTCTCTATTCTTTTTTGAAGAGGAATCAATCCAAAAAAGTGATGGTCTTTTTATCATCATGCAACTCAGTGAAATTCCATGCGGACCTTCTTAATCTCATTCATATTAATTGCTCAAGTATCCATGGAAAACAAAAGCAGCAGACCCGGACTACTACCTTCTTTGACTTCTGCAAAGCAGAAACGGGGATCTTGCTCTGTACTGATGTTGCCGCTCGTGGACTTGACATACCTGCCGTGGACTGTATTGTGCAATATGACCCACCGGATGAACCAAAGGAATATATCCACAGGGTTGGCAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCCTTGCTTTTCCTGATTGAGGAAGAATTGAATTTTCTTCACTACCTGAAGGCAGCTAAGGTTCCGGTGAAAGAATATGTATATGATAAAAAGAAGGTGGCGAATATACAGTCTCACATGGAGAAATTGGTAGCCAAAAATTTTTATTTGAACAAGATGGCCAAAGAAGCTTATAGATCATACATATTAGCATACGATTCACATTCCATGAAGGATATATTCAACGTTCACAAGCTTGATTTGCAGGCCGTGGCTGCTTCATTCTGTTTTTCAAACCCACCGAAGGTGAGTCTGAACATAAACGGCAGTAAGAAAAGGAAGAAAATGCGTCAAGTTGATGGAAGTAAACATGGATTCAGCCACAACAATCCTTATGGAAGCAGGGGAAATGTAGATGATAAGCGGCAATTTGTGGGCATTAGCAGTGGACATGCCAGTTATACAAATACACAATGGGTGTTATTTCATAACATCTCTCCTGCATCCACAAAAAGTTTTGGTAGTACCCCCAATTTTTAG 1803 0.4149 MAEPENNLQTSPMAETETKKNNKHDKKRPRDIANDDHVEQEEEESDNHSDMDAESSKKKKNKVEAEEINEKNNTGSGIMTTESFASLELSQPTCKAIMDMGFQCMTQIQARAIPPLLTGKDVLGAARTGSGKTLAFLVPAVELLHNVKFTPRDGAGVVVICPTRELAMQTHAVAKELLKYHSQTIGLVMGGSARRAEAESIAKGVNLLIATPGRLLDQLQNTKRFIYNNLKCLIIDEADRILEANFEDEMRQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLQQGYVRVPCDKRFIVLYSFLKRNQSKKVMVFLSSCNSVKFHADLLNLIHINCSSIHGKQKQQTRTTTFFDFCKAETGILLCTDVAARGLDIPAVDCIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIEEELNFLHYLKAAKVPVKEYVYDKKKVANIQSHMEKLVAKNFYLNKMAKEAYRSYILAYDSHSMKDIFNVHKLDLQAVAASFCFSNPPKVSLNINGSKKRKKMRQVDGSKHGFSHNNPYGSRGNVDDKRQFVGISSGHASYTNTQWVLFHNISPASTKSFGSTPNF* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2021 600 MobiDBLite consensus disorder prediction 17 36 - -
Lja4g2021 600 CDD SF2_C_DEAD 303 433 - -
Lja4g2021 600 MobiDBLite consensus disorder prediction 1 79 - -
Lja4g2021 600 Pfam DEAD/DEAH box helicase 106 277 IPR011545 GO:0003676|GO:0005524
Lja4g2021 600 MobiDBLite consensus disorder prediction 1 16 - -
Lja4g2021 600 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 56 555 - -
Lja4g2021 600 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 288 IPR014001 -
Lja4g2021 600 PANTHER RNA HELICASE 56 555 - -
Lja4g2021 600 SMART DUF4217_3 463 526 IPR025313 -
Lja4g2021 600 Pfam Helicase conserved C-terminal domain 318 422 IPR001650 -
Lja4g2021 600 Gene3D - 20 292 IPR027417 -
Lja4g2021 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 444 IPR027417 -
Lja4g2021 600 SMART helicmild6 342 423 IPR001650 -
Lja4g2021 600 MobiDBLite consensus disorder prediction 539 559 - -
Lja4g2021 600 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 302 472 IPR001650 -
Lja4g2021 600 Pfam Domain of unknown function (DUF4217) 464 524 IPR025313 -
Lja4g2021 600 SMART ultradead3 101 306 IPR014001 -
Lja4g2021 600 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 82 110 IPR014014 GO:0003724
Lja4g2021 600 Gene3D - 300 542 IPR027417 -
Lja4g2021 600 CDD DEADc_DDX18 93 290 IPR044773 GO:0003724|GO:0005524
Lja4g2021 600 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 234 242 IPR000629 -
Lja4g2021 600 MobiDBLite consensus disorder prediction 50 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2021 Lja-Chr4 20971669 20977808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2021 50 441 Eukaryotic Initiation Factors Gene Family AT3G13920 30.000 3.11e-50 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2021 K13179 - gmx:100798885 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2021 4 20971669 20977808 Lja4g2021 4 20971669 20977808 ECH