Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2014 ATGATTCCACCGCCACTTCCGCTCTCCGATAAATTCTCCGCCGAACGCCACGTGTCACCTGGGAGCAACAATTTCTCCTCGGATTCTTCTCCATGCTTTCGTCACGGCAGTTCCAGTTCCCCTCGCCGAGGGTTTGGTTTGTCGCCGCCGCCGCCGATTCCTCTCCAGGCTCGCATTGAGAAGAGTGAAGAGGAAGAGGTTATGCAGTCATCAAGTTCAACGCCATTGAAAGCAAAAACTACCAAAGCTGAGAGACGAGCCTTGCAGGAAGCGCAACGAGCTGCTAAAACTGCTTCCAAAGGAGCTGGGGGAAGTAAAGAAATTGCTGAACCTGGGAATTCCCCAAGTAAAAGCACAAAGCAGTCTTCACAAAAGAAAGATGTTCCTCCCTCTCCATCTTCAGTGGCTGCTGACAAAAAGGCAGGAGAACGTCCTTTTGGGAAAGATAGGAAAAAGGATGCTGCTCCTCCTCCTCGGATGCAATTCGATGACAAAAATAGAGTGGAAAAGGCTAAAAGGAATGCACTAGTCAATCCAATCCAATCTAGAAACAGGGTTGAATTGTTTCTGCATTTGCCTCAATATGAACGCACCACTCAGCTTTTGAACCTTGAATCAAAGTTTTTCCACCTTGATTCAGTGCATCCTACTGTGTTCCAGGTTGGACTGCGTTATTTGACAGGAGATATAGTAGGGGGTAATGCTCGTTGTATTGCAATGCTAAGAGCATTTCAAGATGCCATTAAAGACTACAGCACACCGCAAGATAAAACCCTTATCAGGGATTTAACTTCAAAAATCAATAGTTACATATCATTTTTTACTGAATGTAGACCACTTTCTATGAGCATGGGAAATGCAATTAGGTTTCTTAAGAGCCGGATTATCAATTTGCCTTTAAATGGTTCTGAGTCTGAGGCAAAAGCAGCTCTGTGTTCTGATATAGACCGGTTCATTAATGAAAAAGTCATTTTTGCTGATAAGGTGATTGTTGGACATGCTTTGAAAAAGGTTATGGATGGGGATGTTATTCTCACATATGGATTTTCATGTGTTGTTGAGATGATTCTTTTACAAGCCTATGATCTTGGAAAACAGTTCCGCGTTGTGGTGGTAGACTCACGGCCAAAGCTTGAAGGTCAGGCCTTACTTCATAGGCTGGTGGCTAAGGGACTGAGTTGCACATACACTCACATAAATGCTGTTTCCTATATCATGCATGAGGTCACACGAGTTTTTCTTGGGGCTTCTGCAGTTTTGTCTAATGGAACTGTATATTCTCGGGTTGGGACTTCTTGTATTGCAATGGTGGCTCATGCATTTCATGTTCCTGTATTGATCTGTTGCGAAGCGTATAAATTTCATGAAAGGGTGCAACTAGATTCAATATGTTCGAATGAACTAGGTGACCCAGAAACTATTGCTAGGGTTCCAGGACGATTGGATGTCAATTATCTTGACCGTTGGACAAGTAAAGACAATTTGAGCATTTTGAATTTGATGTATGATGCTACTCCTTCAGATTATATCTCTGCGATTGTTACGGATTATGGCATGCTTCCTCCTACAAGCGTGTCTGTAATAGTACATGAATATCGCCGAGAGCACTTGTTGATGTAG 1620 0.4321 MIPPPLPLSDKFSAERHVSPGSNNFSSDSSPCFRHGSSSSPRRGFGLSPPPPIPLQARIEKSEEEEVMQSSSSTPLKAKTTKAERRALQEAQRAAKTASKGAGGSKEIAEPGNSPSKSTKQSSQKKDVPPSPSSVAADKKAGERPFGKDRKKDAAPPPRMQFDDKNRVEKAKRNALVNPIQSRNRVELFLHLPQYERTTQLLNLESKFFHLDSVHPTVFQVGLRYLTGDIVGGNARCIAMLRAFQDAIKDYSTPQDKTLIRDLTSKINSYISFFTECRPLSMSMGNAIRFLKSRIINLPLNGSESEAKAALCSDIDRFINEKVIFADKVIVGHALKKVMDGDVILTYGFSCVVEMILLQAYDLGKQFRVVVVDSRPKLEGQALLHRLVAKGLSCTYTHINAVSYIMHEVTRVFLGASAVLSNGTVYSRVGTSCIAMVAHAFHVPVLICCEAYKFHERVQLDSICSNELGDPETIARVPGRLDVNYLDRWTSKDNLSILNLMYDATPSDYISAIVTDYGMLPPTSVSVIVHEYRREHLLM* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2014 539 MobiDBLite consensus disorder prediction 111 130 - -
Lja4g2014 539 MobiDBLite consensus disorder prediction 1 168 - -
Lja4g2014 539 Gene3D - 326 532 IPR042529 -
Lja4g2014 539 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 59 539 - -
Lja4g2014 539 Pfam Initiation factor 2 subunit family 230 522 IPR000649 GO:0044237
Lja4g2014 539 MobiDBLite consensus disorder prediction 16 44 - -
Lja4g2014 539 SUPERFAMILY NagB/RpiA/CoA transferase-like 214 532 IPR037171 -
Lja4g2014 539 MobiDBLite consensus disorder prediction 141 168 - -
Lja4g2014 539 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 59 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2014 Lja-Chr4 20918992 20922227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2014 60 539 Eukaryotic Initiation Factors Gene Family AT5G38640 66.667 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2014 K03680 - gmx:100795256 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5400 1 90737755 90743880 Lja4g2014 4 20918992 20922227 ECH
Lja4g2014 4 20918992 20922227 Lja4g2014 4 20918992 20922227 ECH