Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2007 ATGTTTTCCTCAAATAGTTCCCTCAATGGAAATGACCTAATCTCCTCATCCTCCTACCCTAACAACAACCAAGCATTTATTTTCTCTAGGCATTTTTCCTTTGAAAGCAACCTCACTTCAAAAGATGAAACCAATTGTCCTTTGTCCTTACTTCAATTCCCCTATTCTCCCTTTGAAGACCATGAAAATATCTTCCCTGAACAACACCATGATTTCTCACTCCAACAACATCAATCTCTACCTGAGCCTGTTGTGAACAACAATATGGATGCTTCAATCAACAACAACAAGAATAATAGTATTCCTGGAACCTGCTCCGTTGTAGGAAAAGGCACTGCAACGGAGCAGGTTGCGGTGAGAAGAAGATCTAGCAAGAGGGATCGGCACAGCAAGATCAACACGGCTCGAGGACTCAGGGATCGGAGAATGAGACTTTCACTTGAAGTTGCCAAGAGGTTCTTTGGCCTTCAAGACATGCTGGGCTTTGATAAAGCAAGCAAAACTGTGGACTGGTTGCTGAACCAAGCAAAAGTTGAAATTAAGCACCTTGCAAGGGAGAAGAATCTCCACCACCCAAGTTGTAGTGGCGCCAAGAGCAGTTCTTCAACTTCTGAGGGTGAAGGGGTGTCTGGCTTGGATGAGGTTGTGATTAGTGAAAATCAAGAGCAAGAGAAGGAGCAACAACCAATAGTGAAGAGGAGAGCTAACAAGGTTTGTAGAAAGAGTGCATTCAATGCTATTGGGAGGGAAAAGGCAAGGGAAAGGGCAAGAGAAAGAACAAGAGAAAAGCTGAGGACTAAGAAGCTAGCTGATGATAAAGAATCAAAGCAATGCAAGGAGGTAACAAACCATAACCTGAACTTGTGGAATCCCTTTGAAACTGTGGAAGAATCTGCAGGCACCCACCAGAGCCAAAGTGTGAATAATCATCCCTCCTTGGATCTTCTGGCTGAGGCTGAAAAAGAACCAAGTTCTCAAGCAAAGGAGAATTCAGGAACTGTTGTAGATGATGATATGTCTCATGAAGATTCCTTCTTGATTATGAGCAAATGGAGTCCAACCATGATCCTTTCTTATTTACTACATGGTACAAATTCATTTGTCTTACAATTAATGTCATATGGATTTTTTTCTATTAAGAAACATAACCAATTGAATCTCTTTTCCAACTTCGGTTGGATATGCATTAATTGTGTACCAGCTTTAACATTTTAG 1215 0.4148 MFSSNSSLNGNDLISSSSYPNNNQAFIFSRHFSFESNLTSKDETNCPLSLLQFPYSPFEDHENIFPEQHHDFSLQQHQSLPEPVVNNNMDASINNNKNNSIPGTCSVVGKGTATEQVAVRRRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHLAREKNLHHPSCSGAKSSSSTSEGEGVSGLDEVVISENQEQEKEQQPIVKRRANKVCRKSAFNAIGREKARERARERTREKLRTKKLADDKESKQCKEVTNHNLNLWNPFETVEESAGTHQSQSVNNHPSLDLLAEAEKEPSSQAKENSGTVVDDDMSHEDSFLIMSKWSPTMILSYLLHGTNSFVLQLMSYGFFSIKKHNQLNLFSNFGWICINCVPALTF* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2007 404 MobiDBLite consensus disorder prediction 193 208 - -
Lja4g2007 404 ProSiteProfiles TCP domain profile. 125 183 IPR017887 -
Lja4g2007 404 MobiDBLite consensus disorder prediction 189 210 - -
Lja4g2007 404 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 52 349 IPR005333 GO:0003700
Lja4g2007 404 ProSiteProfiles R domain profile. 246 263 IPR017888 -
Lja4g2007 404 Pfam TCP family transcription factor 124 265 IPR017887 -
Lja4g2007 404 PANTHER TRANSCRIPTION FACTOR TCP18 52 349 - -
Lja4g2007 404 MobiDBLite consensus disorder prediction 250 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2007 Lja-Chr4 20765754 20767695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2007 121 266 TCP Transcription Factor Family AT3G18550 44.304 5.20e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja4g2007 TCP 2.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2007 - - gmx:100803669 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5397 1 90386529 90387482 Lja4g2007 4 20765754 20767695 ECH
Lja1g2670 1 31484929 31486838 Lja4g2007 4 20765754 20767695 ECH
Lja2g3166 2 67837402 67840198 Lja4g2007 4 20765754 20767695 ECH
Lja4g2007 4 20765754 20767695 Lja4g2007 4 20765754 20767695 ECH