Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2005 ATGAGCTGGCGAAGGGTGTTGAAGTCAGTGCAGGCACTCGCTGCACACACTTTTCTCTTCTGCTTCACTCTCTTGCTCCTTCTCAAGCTCGATCATCAACTCTCTTCCTCTTGGTGGACAATATTTTCACCTCTTTGGATGTTCCATGCCGTTGTCGCTCGAGGAAGGTTTTCATTACCTGCACCATCAGCTCCACGTAATCGACATTGGGCACCATGCCATACGGTCGTCGCAACCCCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGTTCGTGGCTTTGCAGCAGTCAATCTGAAGATTGTGTTCCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGAATGTGTAGGGCTCTAATGCCAGGGGATGAAGATAGCATGAGTGATGAAGCAATCTGGGAAACTCTTCCTCACTTTTGGATTGCAATCTCTATGGTGTTCTTCATTGCTGCCACAATCTTCACCCTCTTAAAACTGAGTGGTGACGTAGGTGCTCTAGGCTGGTGGGACTTATTTATTAACTTTGCTATTGCCGAGTGCTTTGCTTTTCTTGTATGTACAAAGTGGTCCAATCCGGTCATTCATAGAAATTCCAGAGAAGCCAGTTCATCTTCTACTGCAATTAGATATCTTGACTGGAACAGTGGTTTAACACTTTCTTCAGAGGAAAATCGTGAGGGGAGAATTTGCAGCCTTCAAGACATAGGAGGTCATTTCATGAAAGTACCAGTTATTGCATTCCAGGTTCTTCTTTGCATGCATTTAGAGGGAACACCTGCTCGTGCCGTGTATCTACCTCTTCCAGTTATTTTCTCTCCCCTTTTCCTACTTCAAGGTGTTGCTGTGGTGTTATCTGTATCCAAGTTTGTGGAGAAACTTGTGCTTCTGCTACGAAGTGGAGCTGGTGGAGGAATATATTTTAGAGTTTCTTTGAGAGCTCAGGATTGTTTGGGATTCTTGCACCATGGTTCTAGATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACAGGCACGATTGTACCATGAGGGAGCATCGGGGTATAATACTTTCTGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCTAAAAAGGATCTCGCTGAGGAGGTGTGGAGACTCCAGGCAGCTCTTGGTGAGCAGACGGAAATTATAAAATACAGCCAACAGGAGTATGAAAGACTTAAAAATGAGAAAGTGTTATGCAGAATTTGTTTTGAGGGAGAGATTAGTGTTGTATTGCTCCCATGTAGGCATCGTGTCCTTTGCAGCACTTGCTCAGAGAAGTGTAAGAAGTGTCCAATTTGCCGTGACTCTATAGCAGAGCGCTTGCCCGTATATGATGTCTAG 1395 0.4366 MSWRRVLKSVQALAAHTFLFCFTLLLLLKLDHQLSSSWWTIFSPLWMFHAVVARGRFSLPAPSAPRNRHWAPCHTVVATPLLIAFELLLCIYLESLYVRGFAAVNLKIVFLPLLTFEIIILIDNFRMCRALMPGDEDSMSDEAIWETLPHFWIAISMVFFIAATIFTLLKLSGDVGALGWWDLFINFAIAECFAFLVCTKWSNPVIHRNSREASSSSTAIRYLDWNSGLTLSSEENREGRICSLQDIGGHFMKVPVIAFQVLLCMHLEGTPARAVYLPLPVIFSPLFLLQGVAVVLSVSKFVEKLVLLLRSGAGGGIYFRVSLRAQDCLGFLHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEIIKYSQQEYERLKNEKVLCRICFEGEISVVLLPCRHRVLCSTCSEKCKKCPICRDSIAERLPVYDV* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2005 464 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 464 - -
Lja4g2005 464 SUPERFAMILY RING/U-box 407 459 - -
Lja4g2005 464 SMART ring_2 417 451 IPR001841 -
Lja4g2005 464 Pfam Transmembrane Fragile-X-F protein 28 289 IPR019396 -
Lja4g2005 464 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 464 - -
Lja4g2005 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 462 IPR013083 -
Lja4g2005 464 Pfam Zinc finger, C3HC4 type (RING finger) 414 456 - -
Lja4g2005 464 ProSiteProfiles Zinc finger RING-type profile. 417 452 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2005 Lja-Chr4 20727583 20735898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2005 1 464 C3H Transcription Factor Family AT1G73950 71.552 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2005 - - gmx:100791390 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2005 4 20727583 20735898 Lja4g2005 4 20727583 20735898 ECH