Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2004 ATGTCATCAAGTGGAACCATTTGGAACTATGAAGAAGAAAAAGCATTTGAGAATGCAATTGCTATGCATTGGAATGATGAAGAAGCAGAATCAGAAGAGCAATGGGAGAAGATTGCTTCAGAAGTCCCCAACAAAAGCATGGAAGAAGTGAAGCAACATTACCAGGCACTTGTAGATGATGTGAGTGCAATTGAGGGTGGTCTTGTACCATTTCCAAACTATGTTGCTGAAGAAACTACTTCTTCAAATAAAGATTTTCATGGCTCTCACAAGTCCAATTCTTCAGATAAGAGATCAAGTTGCAATTTTGGAAGTGGGTTTTCTGGGTTAGGACATGACTCTGCCACACATAGTGGTAAAGGAAGCCTTTCAAGGTCATCAGAACAAGAAAGGAAAAAAGGAATTCCTTGGACAGAAGAGGAGCACAGGTTATTTTTACTTGGTCTAGACAAGTTTGGGAAAGGGGATTGGAGAAGCATTTCAAGGAACTTTGTGATTTCTAGGACACCAACTCAAGTGGCAAGCCATGCACAGAAGTACTTCATTAGGTTGAACTCCATGAATAGAGACAGAAGGAGGTCTAGTATCCATGACATTACAAGTGTGAACAATGGAGATGTGGCTAGTAATCAAGCACCAATCACAGGCCAGCATGGCAGCACAATTCCTCCAAGCACAATGGGTGTAGGAGTAGGACATTCACTGAAGCATAGAGTTCAGCCCCATCATATACCTGGTGGTTTAGGCATGTATGGAACACCAGTTGGGCATCCTGTGGTGGCTGCTCCTCCTGGCCATATGGCATCTGCAGTTGGGACTCCTGTTATGCTTCCTCCTGGACACCACCACCCTCATCCCCATCCCCATCCTCATCCTCCTTATGTTGTCCCTCTAGCTTACCCAATGGCACCTCCAACAATGCACCAATAA 930 0.4419 MSSSGTIWNYEEEKAFENAIAMHWNDEEAESEEQWEKIASEVPNKSMEEVKQHYQALVDDVSAIEGGLVPFPNYVAEETTSSNKDFHGSHKSNSSDKRSSCNFGSGFSGLGHDSATHSGKGSLSRSSEQERKKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNQAPITGQHGSTIPPSTMGVGVGHSLKHRVQPHHIPGGLGMYGTPVGHPVVAAPPGHMASAVGTPVMLPPGHHHPHPHPHPHPPYVVPLAYPMAPPTMHQ* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2004 309 PANTHER TRANSCRIPTION FACTOR MYBS1 1 308 - -
Lja4g2004 309 SUPERFAMILY Homeodomain-like 6 62 IPR009057 -
Lja4g2004 309 SMART sant 4 60 IPR001005 -
Lja4g2004 309 SMART sant 133 183 IPR001005 -
Lja4g2004 309 CDD SANT 8 58 IPR001005 -
Lja4g2004 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Lja4g2004 309 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Lja4g2004 309 ProSiteProfiles SANT domain profile. 3 54 IPR017884 -
Lja4g2004 309 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 183 IPR006447 GO:0003677
Lja4g2004 309 Gene3D - 135 187 - -
Lja4g2004 309 ProSiteProfiles Myb-like domain profile. 8 58 IPR001005 -
Lja4g2004 309 SUPERFAMILY Homeodomain-like 130 186 IPR009057 -
Lja4g2004 309 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Lja4g2004 309 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Lja4g2004 309 PANTHER TRANSCRIPTION FACTOR KUA1 1 308 - -
Lja4g2004 309 MobiDBLite consensus disorder prediction 112 135 - -
Lja4g2004 309 CDD SANT 136 181 IPR001005 -
Lja4g2004 309 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Lja4g2004 309 Gene3D - 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2004 Lja-Chr4 20712580 20714373 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g2004 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2004 - - vun:114176836 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2004 4 20712580 20714373 Lja4g2004 4 20712580 20714373 ECH