Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1999 ATGATAAAGCAAATTCTTGGCAAATTGCCAAAAAAGATGACAAAATCTGACTCCTCAGATTCCGCGAGGAGCGATTCTGGCAATTCTACTAGTTTTGGGAATGTATTTCAGTGTACAAATGTTGGAAGTACCATCTCAAGCAAATTAAATGTTGTGAAGCGGGTGTCTTCGGTTGTTTTTCCGGCAAGCATGAGTGCTGGAGTGGAAGCAGTTGATCCTTCGCTATCCTTCAAAGATGTTTCGAACACGCAGAAGCAAAGCCTGTTTATCAGTAAATTGAATCTTTGCTGCAAAGTCTATGATATGAGTGATCCTGATAAGAACTGTACAGAGCAAGATCTTAAACGTCAAACGTTGCTAGAGCTTGTTGATTTTGTATCTTCTGGATCTGTGAAGTTCACCGAACCAGCGATTGCCGCAGTGTGTAAAATGTGTGCAACCAATTTGTTTAGGGTTTTCCCACCTAAGTTTCGTACAAGTTCTACTGGTGGAGAAACAGAAGATGATGAACCTATGTTTGATCCCGCCTGGTCTCACCTCCAAGTCGTTTATGATCTACTCCTCCAATTCATCAACTATAACTCTCTTGATGTGAAGTTGGCAAAGGCGCATTTAGATCATGCTTTTATTTTAAGATTACTTGACCTTTTTGATTCTGAGGACCCTAGAGAAAGAGATTGCTTGAAAACAATTCTGCATAGAATCTATGGGAAGTTCATGGTTCACAGGCCTTTCATGCGGAAATCTGTTAGCAACATCATCTACCGGTTTGTTTTCGAGACTCAGCGGCATAACGGAATTGCTGAGTTGTTGGAGATTTTTGGGAGTGTTATTAGTGGGTTTGCCTTGCCATTGAAGGAAGAGCACAAAATATTTTTGTGGAAGGCTTTAATTCCTCTACACAAACCTAAATCTGTTGGTGTTTATCATCAGCAGTTAACATATTGTGTTGTACAGTTCATAGATAAGGATCAAAGACTGGTTAGCTCTGTGATAAATGGACTATTAAAGTACTGGCCGGTGACAAATAGCCAAAAAGAGCTCATGTTCATAAGTGAGTTGGAAGAGATTTTGGAAATGACTAGTATGCCTGAATTCCAGAAGATTATGATCCCACTGTTTCGCCGAATGGGTTACTGCCTTAGTAGTTCTCATTACCAGGTGGCGGAACGAGCGCATTTGCTATGGAACAATGAGCACATCCTGAATCTGATCACACAGAACCGGCAGGTGATTCTACCTCTTGTGTTCTCAGCACTAGTACATAACTCCCAGAGTCACTGGAACCAAGCAGTGCTCAACCTGACTCAGAACATCAAGAAAATGCTCTCTCAGATGGATGAGGATTTGGTCCTTGCCTGCCAACGCAAGACCGAGGAGGAAGATTCAAAGTCAGGTGCTGCCGCCGAGAGGCGAAGATTGACATGGGAACGCCTAGAAGCTGCCGCCGCTGCTGCCGCTGCCAGTGTCCAATCTCTAGGTGGTGGTGAGATTTTAGTTCCAGTGAAGTCTGCTACATGCTCTGTGGCCTGCTAA 1536 0.431 MIKQILGKLPKKMTKSDSSDSARSDSGNSTSFGNVFQCTNVGSTISSKLNVVKRVSSVVFPASMSAGVEAVDPSLSFKDVSNTQKQSLFISKLNLCCKVYDMSDPDKNCTEQDLKRQTLLELVDFVSSGSVKFTEPAIAAVCKMCATNLFRVFPPKFRTSSTGGETEDDEPMFDPAWSHLQVVYDLLLQFINYNSLDVKLAKAHLDHAFILRLLDLFDSEDPRERDCLKTILHRIYGKFMVHRPFMRKSVSNIIYRFVFETQRHNGIAELLEIFGSVISGFALPLKEEHKIFLWKALIPLHKPKSVGVYHQQLTYCVVQFIDKDQRLVSSVINGLLKYWPVTNSQKELMFISELEEILEMTSMPEFQKIMIPLFRRMGYCLSSSHYQVAERAHLLWNNEHILNLITQNRQVILPLVFSALVHNSQSHWNQAVLNLTQNIKKMLSQMDEDLVLACQRKTEEEDSKSGAAAERRRLTWERLEAAAAAAAASVQSLGGGEILVPVKSATCSVAC* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1999 511 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 491 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lja4g1999 511 Gene3D - 82 482 IPR011989 -
Lja4g1999 511 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 76 483 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lja4g1999 511 PIRSF PP2A_B56 4 507 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lja4g1999 511 SUPERFAMILY ARM repeat 86 465 IPR016024 -
Lja4g1999 511 MobiDBLite consensus disorder prediction 1 28 - -
Lja4g1999 511 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1999 Lja-Chr4 20596417 20600656 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1999 K11584 - gmx:100814349 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1999 4 20596417 20600656 Lja4g1999 4 20596417 20600656 ECH
Lja4g1999 4 20596417 20600656 Lja6g1779 6 45052349 45057579 PCT
Lja6g1780 6 45064840 45070638 Lja4g1999 4 20596417 20600656 PCT