LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g1996	ATGTGGAACTCGGCGGAGAACGCGTTTGCCAGATCGGCGTCGTTTAGAAGAGAAGGTCAAGAAGACGAGGACGCGCTACGCTGGGCGGCGCTTGAGCGGCTTCCGACGTACAAGCGAGCGCGCCGCGGGATCTTCAAGAATCTCACCGGCGATATGAAGGAAGTCGATGTCACCGATCTTCAAGCGCAGGAGCAGCGCCTTCTTCTCGAGAGGCTCGCCGATAGTGATCCTGAGCGGCTCTTCCGTCGCGTTAGAAGCCGATTCGACGCAGTAGATTTGGAGTTTCCGAAGATTGAAGTTAGATTTCAGAACTTGACTGTTGAGACTTTTGTACATGTTGGAAGCAGAGCTTTGCCTACAATTCCCAATTTCATTTCAAATATGACTGAGGCTCTTTTAAGACAGTTGAAGATATACAGGAAAAAGAGAAGCAAATTGACAATTCTTGCGGACATTAGCGGGATTATCAGACCTTCAAGGCTAACGTTACTAATGGGTCCGCCAAGCTCTGGAAAAACGACACTGCTGTTAGCTCTTGCTGGTAGGCTAGGACCTGGTTTGCAGATGTCAGGGAACATTACGTACAATGGACATCGTCTGAATGAGTTTGTTCCTCAGAGAACAGCTGCTTATGTCAGCCAACAAGATTGGCATGTGGCAGAAATGACTGTAAGGGAAACTCTCCAGTTTGCGGGTCGCTGTCAAGGCGTTGGATTTAATTTTGATATGTTGCTGGAACTTGCCAGAAGAGAAAAGAATGCTGGAATAAAACCCGATGAAGATCTTGATATATTCATGAAGTCATTAGCTCTCGGTGGACAGGAAACAAATCTTGTGGTGGAATACATCATGAAGATTTTAGGTTTGGACATATGTGGTGACACATTGGTAGGGGATGAAATGATTAAGGGCATCTCAGGGGGACAAAAGAAGCGGCTCACTACAGGTGAGTTAATAATTGGTCCAGCAAGAGTGCTATTCATGGATGAGATATCAACTGGTCTTGATAGTTCGACTACTTATCAGATTATCAGACATCTTAAGCATTCAACTCGTGCACTTGATTCAACCACAATTATATCTCTTCTTCAACCAGCTCCTGAGACCTATGAGTTGTTTGATGATGTTATTCTTTTGTCTGAGGGACAGATAGTATATCAGGGGCCCCGTGAATCTGCTCTTGATTTTTTCAAAGTGATGGGATTCAGTTGTCCTGAGCGAAAAAATGTAGCAGATTTCTTACAGGAAGTTACTTCCAAGAAAGACCAAGAGCAGTACTGGTCCGCTTTTGAACGCCCTTACCGGTACATACCTGTTGGGAAGTTTGCTGAGGCATTTTCCTTGTATCGTGAGGGAAAGAGTTTGTCTGAGGAACTAAATGTTCCTTTCGATAGGCGTTATAATCATCCAGCCGCCTTGGCAACTTGTACCTATGGCGCGAAAAGGCTTGAACTTCTCAAGATTAATTTCCAGTGGCAGAAGCTTCTTATGAAGCGGAATTCATTTATTTATGTATTTAAATTTGTTCAGCTGTTTTTGGTTGCTTTAATAACAATGAGTGTTTTCTTCCGAACAACGATGCACCACAATACAATTGACGATGGAGGCTTGTATCTTGGAGCACTCTACTTTTCTATGGTTATTATTCTTTTCAATGGTTTTACGGAGGTGTCGATGTTAGTTGCAAAGCTTCCGGTTCTTTACAAGCACAGAGACTTGCACTTCTATCCTAGCTGGGCATATACACTCCCTTCTTGGTTCCTTAGTATCCCAACTTCCATCATGGAGGCTGGATGCTGGGTCGTGGTTTCATACTATGCAAGTGGCTATGATCCTGCATTTACTAGATTTTTGCGGCAGTTCTTGCTTTATTTCTTTCTGCACCAGATGTCTATAGGTCTGTTTCGTTTGATAGGATCCTTGGGCCGGAATATGATTGTGGCAAATACATTTGGATCATTTGCCATGTTGGTTGTAATGGCTCTTGGCGGATATATAATTTCGAGAGACCGTATACCGAGTTGGTGGATATGGGGATTTTGGGTTTCTCCTTTGATGTATGCACAGAATTCAGCTTCTGTTAATGAGTTCCTTGGACATTCATGGGATAAGAAAGCTGGAAATCAGACCACCTATTCATTGGGTATGGCAGTATTAAAACAGCGGAGTCTGTATCCAGAGAGCTATTGGTATTGGATTGGTCTTGGTGCAATGGTTGGATATACGATTTTGTTCAACATTCTATTTACGATCTTCTTAGCTTACCTTAATCCATTGGGAAGACCACAAGCTGTAGTTTCAAAGGAAGAGTTGCAAGAAAGAGAAAAGAGAAGAAACGGTGAAAGTGTTGTCATTGAATTGAGAGAGTACTTGCAGCATTCGGCATCAAATGGAAAGCATTTTAAGCAAAGAGGAATGGTTCTCCCATTTCAACCACTTTCCATGGCTTTTAGCAATATCAATTACTATGTGGATGTCCCTTTGGAATTGAAACAACAAGGGATATTAGAAGATAGGCTGCAGCTGCTTGTTAATGTTACTGGAGCTTTTAGGCCTGGTATATTGACAGCATTGGTTGGAGTAAGTGGTGCTGGGAAAACTACACTAATGGATGTATTAGCTGGAAGAAAAACTGGTGGAGTCATAGAAGGAAGCGTATATGTATCTGGTTATCCCAAAAGACAAGACACTTTTGCAAGAATTTCTGGTTACTGTGAGCAGACTGATGTTCATTCCCCTTGCTTGACTGTCTGGGAGTCCTTACTGTTTTCTGCTTGGCTTCGATTATCTTCAGATGTTGACTTCGAGACACAAAAGGCCTTCGTTGAGGAGATAATGGAGCTTGTGGAGCTCACTCCTTTAAGTGGAGCACTGGTAGGTCTACCTGGAATTGATGGTCTGTCAACAGAACAACGAAAAAGGTTGACCATAGCAGTGGAACTGGTTGCCAACCCTTCAATAGTCTTCATGGATGAACCCACATCAGGATTGGATGCTCGGGCTGCTGCCATTGTGATGAGAACTGTGAGGAATATAGTTAATACTGGGCGAACAATTGTGTGCACGATCCATCAGCCTAGCATAGACATATTTGAATCCTTTGATGAGCTTTTGTCTATGAAGCGGGGAGGAGAGCTCATATATGCTGGTCCACTTGGCCCTAAATCTAGAGAACTTATAAGTTATTTCGAGGCAATCGAAGGAGTTCCAAAGATCAGGTCTGGATATAATCCTGCTACATGGATGCTGGAGGTTACTTCTTCAGCAGAAGAAAGCCGATTGGGAGTGGACTTTGCAGAAATTTACCGAAGATCAAGTTTATATCAATATAACCAAGAGTTAGTCGAAAGCTTGAGCAAGCCAAGTAGTAATGCAAAAGAATTGCATTTCCCAACCAAGTACTGCCGGTCATCTTTTGAGCAGTTCCTAACCTGTCTTTGGAAGCAAAATCTATGTTACTGGCGAAATCCTCAGTACACGGCTGTTCGCTTCTTCTACACTGTCATCATCTCATTGATGCTTGGGACCATATGCTGGAGATTTGGTGCTAGGAGGGAGACACAGAAAGATCTATTTAATGCCATGGGATCCATGTATTCTGCAATCCTCTTCATTGGCATAACAAATGGCACAGCTGTTCAACCTGTTGTTTCTGTGGAAAGATTTGTTTCGTATAGAGAAAGAGCTGCAGGAATGTACTCGGCTTTATCATTTGCATTTGCTCAGGTTGTTATTGAGTTTCCATATGTGTTTGCCCAGGCTATGATATACTCTTCAATATTCTACTCCATGGCTGCCTTTGTCTGGACTGTTGATAGGTTCATTTGGTACTTGTTCTTCATGTACTTCACCATGTTGTATTTTACCTTCTACGGAATGATGACTACGGCTATCACACCAAATCATAATGTTGCTGCCATCATTGCTGCTCCATTTTACATGTTGTGGAACCTTTTCAGTGGTTTTATGATTCCTCATAAGAGAATCCCTATGTGGTGGAGATGGTACTACTGGGCAAACCCTGTAGCCTGGAGTCTGTATGGTCTCCTAACTTCACAGTATGGTGATGATAGTAATTTGGTGAAGCTATCTGATGGAAACATGAGCCCCATAAGGCTAGTACTCAAAGAAGTGTTCGGGTACAGGCATGATTTCTTGTGCTTTGCTGCTACTATGGTAGCTGGCTTCTGCATATTTTTTGCAATTATATTTGCCTTTGCAATTAAATCCTTCAATTTCCAAAGGAGATGA	4251	0.4277	MWNSAENAFARSASFRREGQEDEDALRWAALERLPTYKRARRGIFKNLTGDMKEVDVTDLQAQEQRLLLERLADSDPERLFRRVRSRFDAVDLEFPKIEVRFQNLTVETFVHVGSRALPTIPNFISNMTEALLRQLKIYRKKRSKLTILADISGIIRPSRLTLLMGPPSSGKTTLLLALAGRLGPGLQMSGNITYNGHRLNEFVPQRTAAYVSQQDWHVAEMTVRETLQFAGRCQGVGFNFDMLLELARREKNAGIKPDEDLDIFMKSLALGGQETNLVVEYIMKILGLDICGDTLVGDEMIKGISGGQKKRLTTGELIIGPARVLFMDEISTGLDSSTTYQIIRHLKHSTRALDSTTIISLLQPAPETYELFDDVILLSEGQIVYQGPRESALDFFKVMGFSCPERKNVADFLQEVTSKKDQEQYWSAFERPYRYIPVGKFAEAFSLYREGKSLSEELNVPFDRRYNHPAALATCTYGAKRLELLKINFQWQKLLMKRNSFIYVFKFVQLFLVALITMSVFFRTTMHHNTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSIMEAGCWVVVSYYASGYDPAFTRFLRQFLLYFFLHQMSIGLFRLIGSLGRNMIVANTFGSFAMLVVMALGGYIISRDRIPSWWIWGFWVSPLMYAQNSASVNEFLGHSWDKKAGNQTTYSLGMAVLKQRSLYPESYWYWIGLGAMVGYTILFNILFTIFLAYLNPLGRPQAVVSKEELQEREKRRNGESVVIELREYLQHSASNGKHFKQRGMVLPFQPLSMAFSNINYYVDVPLELKQQGILEDRLQLLVNVTGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYVSGYPKRQDTFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDFETQKAFVEEIMELVELTPLSGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLSMKRGGELIYAGPLGPKSRELISYFEAIEGVPKIRSGYNPATWMLEVTSSAEESRLGVDFAEIYRRSSLYQYNQELVESLSKPSSNAKELHFPTKYCRSSFEQFLTCLWKQNLCYWRNPQYTAVRFFYTVIISLMLGTICWRFGARRETQKDLFNAMGSMYSAILFIGITNGTAVQPVVSVERFVSYRERAAGMYSALSFAFAQVVIEFPYVFAQAMIYSSIFYSMAAFVWTVDRFIWYLFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPFYMLWNLFSGFMIPHKRIPMWWRWYYWANPVAWSLYGLLTSQYGDDSNLVKLSDGNMSPIRLVLKEVFGYRHDFLCFAATMVAGFCIFFAIIFAFAIKSFNFQRR*	1417

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g1996	1416	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	133	406	IPR003439	GO:0005524
	Lja4g1996	1416	PANTHER	ATP-BINDING CASSETTE TRANSPORTER	9	1416	-	-
	Lja4g1996	1416	Pfam	Plant PDR ABC transporter associated	702	766	IPR013581	-
	Lja4g1996	1416	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	142	406	IPR027417	-
	Lja4g1996	1416	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	829	1051	IPR027417	-
	Lja4g1996	1416	Gene3D	-	133	433	IPR027417	-
	Lja4g1996	1416	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 32	9	1416	-	-
	Lja4g1996	1416	Pfam	ABC-transporter N-terminal	65	124	IPR029481	-
	Lja4g1996	1416	Gene3D	-	828	1058	IPR027417	-
	Lja4g1996	1416	SMART	AAA_5	852	1044	IPR003593	-
	Lja4g1996	1416	SMART	AAA_5	158	383	IPR003593	-
	Lja4g1996	1416	Pfam	ABC-2 type transporter	364	417	IPR043926	GO:0140359
	Lja4g1996	1416	Pfam	ABC transporter	844	995	IPR003439	GO:0005524
	Lja4g1996	1416	Pfam	ABC-2 type transporter	1140	1353	IPR013525	GO:0016020\|GO:0140359
	Lja4g1996	1416	Pfam	ABC-2 type transporter	486	697	IPR013525	GO:0016020\|GO:0140359
	Lja4g1996	1416	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	815	1068	IPR003439	GO:0005524
	Lja4g1996	1416	CDD	ABCG_PDR_domain2	812	1050	IPR034003	-
	Lja4g1996	1416	Pfam	ABC transporter	150	331	IPR003439	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g1996	Lja-Chr4	20556328	20565339	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja4g1996	840	1027	Calmodulin-binding Proteins	AT2G36910	25.521	3.25e-06	50.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja4g1996	4	20556328	20565339	Lja4g1996	4	20556328	20565339	ECH