Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1995 ATGTCTCGCGTCAACTATGAAGCTGATCGAATGTTAGACGAGTACATCCATGATTATTTCGTGAAGAGACAGTTACATGCTTCTGCAAGCACATTTCAGACTGAAGGAAATGTCTCAACGGAGCCTGTTGTCATCGACGCACCTAATGGCTTTCTCTTTGAGTGGTGGTCAGTCTTTTGGGAGATATTCGTTAATAGGACAGGTGCGAGGCGCTCGGAAGCCGCAGTGGCTTACCTTAAGATGCAACAAATTAAGGCTCGAGAAATGCGGCAGCAGCGAGAGCAAGAGCTTCCGAATCCAAATCAGAATCAACAAACACAAATGCAGCTGCCTGCTCTGCAGCAGCAATGTATAGGTGGAACTCAATTTGTTAGTGGCTGTGCTAACTGTCCTATTCACAATAATCCTTTGATGAGAAAGAACCAAGCAATTTGTAATGTTATGCCAATCAAAATGTATGATGACAAGTTGAAGCTTCACCCCCAGAGAGATGCTTTTGATGATGCCACCATTAAGCAAAAGGAAACTGATAAAGTTGGCCAGCTTCTGGACTCAAATCATGCCTCTTTGTTGAAAGGACAGACTACAACTACAGGACAAACATTTCTCTGTACACCTAGCATTTTGCCCGCGAATGTTCAAGCTCAAAATCAGACCCAGCAACTTCCAGGGTCTAGACAAGGATTCGATCAAGTTCGCTCAGGATTTGTGCAGCAGAATAATTCGATGCAGTCTGCATCTTTCAATCAATTTTCCCGACAGCCGCAATTTATGCTTCAGGCACAGCAGAATTCAGTTTTACCATCTGTCTGCGATCATGAGAGCAGAAAACTCAGACGGTATTTTAAAATTCAAACTATGGGTCTCGAGAGAGATGGCCAGTCAGATTTTGTAAGTGATTCAATTCCTAATATTGGAAGATCTGCACAAGCTGGTTCCCCTTTATTGCTTCACCCTGACTCAGATATGTCCCTTCAGCAACAAGTTCAAAAGAGTATTCAGGAGTTTCAACCTTCACAGCATCCTCTTTCAAGCCAGAAGTCTCAGTGTCTCCAGCGGCAAGCAAAAATTGGCTCTGAAAGCATGATAGTAGATGGAAATGACCAGGCTTCCAAAAGAAAAATCGGGCGAAAGCGAAAGCCTGCATCATCTTCAGGCCCTGCCAATAGCTCAGGAACTGCAAAGGCCACAGCATCATGTATCAGTTCACCTTCTACACCATCTGCACAAACACCAGGAGATGTTATGACAGCACCGACTGTGCAACAGAATGGCTTGGGCTCACTTACATCAGCACAGAATCAATTGGATGATATGGAGCACATTGTGGATGGTGAACATTTGGGTGACAATGTTAAGTCAGACTTATCTCCTGATGCAGCAGTCAATAGACAAAGTGTTGATCAAGAATTCTCATTTAAGGAGATCAAGTTTGTAAAGGCAAGTTCACATAAAGTTGAGTGTTGTCACTTTTCATCAGACGGAACACTGTTTGTTACTGGTGGCGATGATAGAAAGGCTTCTTTGTGGTGCACAGAATCCTTTAACCTGAAATCTACATTTGAAGAGCACACTCAACAGATAACTGATGTTCGATTTTGTCCAAGCATGTTGCATATTGCTACATCCTCAGCTGACAAGACTGTTAGGGTTTGGGGCGCTGATAATCCTGGTTATTCTCTTCGAACTTTCTCAGGACATGCATCAACTGTAGTTTCAGTAGACTTTCACCCCAGTTGTAATGACCTTATTTGCTCTTGTGACAATACTGAGATAAGATACTGGAATATTAAAGAGGGTAGTTGTGCTAAGGTTTTCAAGGGCGGTGCTACTCAGATAAGATTTCAGCCTTGTATGGGAAGTCTTCTTGCAGCTGCAAAAGATAAGTTCATATCCATTTATGATGTGGAAACCCTGCGTTGCAGACTTAAATTAAAGGGCCATAATGACCCTGTTCGCTGTGTGTGCTGGCATCCTTCCGGAGAATATTTGGCATCTCTTAGTGATGATCAGGTAATAATCTGGAATGTTGCACCTGGTAACGGAAGGATCACTCATGAATTAATCTTACCTGGGAAAAACATGAACACCTGCGCTTTCCATCCCTTACATAATGTGCTTGTCATTGGCTGCAATGAGACTCTTGTGCTGTGGGACTTCAGTCAGAACCAAACCATGACGTTGCTGCGTGCACATAACAGTCTCGTATCTTCCTTGGCAGTATCCAATGTTACTGGGTTGGTGGCTTCAGTTAGTCATGACAACTATTTCAAAATCTGGAAGTGA 2286 0.4318 MSRVNYEADRMLDEYIHDYFVKRQLHASASTFQTEGNVSTEPVVIDAPNGFLFEWWSVFWEIFVNRTGARRSEAAVAYLKMQQIKAREMRQQREQELPNPNQNQQTQMQLPALQQQCIGGTQFVSGCANCPIHNNPLMRKNQAICNVMPIKMYDDKLKLHPQRDAFDDATIKQKETDKVGQLLDSNHASLLKGQTTTTGQTFLCTPSILPANVQAQNQTQQLPGSRQGFDQVRSGFVQQNNSMQSASFNQFSRQPQFMLQAQQNSVLPSVCDHESRKLRRYFKIQTMGLERDGQSDFVSDSIPNIGRSAQAGSPLLLHPDSDMSLQQQVQKSIQEFQPSQHPLSSQKSQCLQRQAKIGSESMIVDGNDQASKRKIGRKRKPASSSGPANSSGTAKATASCISSPSTPSAQTPGDVMTAPTVQQNGLGSLTSAQNQLDDMEHIVDGEHLGDNVKSDLSPDAAVNRQSVDQEFSFKEIKFVKASSHKVECCHFSSDGTLFVTGGDDRKASLWCTESFNLKSTFEEHTQQITDVRFCPSMLHIATSSADKTVRVWGADNPGYSLRTFSGHASTVVSVDFHPSCNDLICSCDNTEIRYWNIKEGSCAKVFKGGATQIRFQPCMGSLLAAAKDKFISIYDVETLRCRLKLKGHNDPVRCVCWHPSGEYLASLSDDQVIIWNVAPGNGRITHELILPGKNMNTCAFHPLHNVLVIGCNETLVLWDFSQNQTMTLLRAHNSLVSSLAVSNVTGLVASVSHDNYFKIWK* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1995 761 ProSiteProfiles Trp-Asp (WD) repeats profile. 521 552 IPR001680 GO:0005515
Lja4g1995 761 SMART Lish 8 40 IPR006594 GO:0005515
Lja4g1995 761 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lja4g1995 761 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 521 552 - -
Lja4g1995 761 ProSiteProfiles Trp-Asp (WD) repeats profile. 729 761 IPR001680 GO:0005515
Lja4g1995 761 SUPERFAMILY WD40 repeat-like 471 761 IPR036322 GO:0005515
Lja4g1995 761 MobiDBLite consensus disorder prediction 294 421 - -
Lja4g1995 761 MobiDBLite consensus disorder prediction 320 356 - -
Lja4g1995 761 SMART WD40_4 514 553 IPR001680 GO:0005515
Lja4g1995 761 SMART WD40_4 681 719 IPR001680 GO:0005515
Lja4g1995 761 SMART WD40_4 599 635 IPR001680 GO:0005515
Lja4g1995 761 SMART WD40_4 722 761 IPR001680 GO:0005515
Lja4g1995 761 SMART WD40_4 557 596 IPR001680 GO:0005515
Lja4g1995 761 SMART WD40_4 638 676 IPR001680 GO:0005515
Lja4g1995 761 SMART WD40_4 472 511 IPR001680 GO:0005515
Lja4g1995 761 ProSiteProfiles Trp-Asp (WD) repeats profile. 564 605 IPR001680 GO:0005515
Lja4g1995 761 Gene3D - 320 610 IPR015943 GO:0005515
Lja4g1995 761 ProSiteProfiles Trp-Asp (WD) repeats profile. 645 685 IPR001680 GO:0005515
Lja4g1995 761 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 3 227 IPR044716 GO:0003714
Lja4g1995 761 CDD WD40 479 761 - -
Lja4g1995 761 Gene3D - 611 761 IPR015943 GO:0005515
Lja4g1995 761 Pfam WD domain, G-beta repeat 560 596 IPR001680 GO:0005515
Lja4g1995 761 Pfam WD domain, G-beta repeat 725 761 IPR001680 GO:0005515
Lja4g1995 761 Pfam WD domain, G-beta repeat 641 676 IPR001680 GO:0005515
Lja4g1995 761 Pfam WD domain, G-beta repeat 517 552 IPR001680 GO:0005515
Lja4g1995 761 Pfam WD domain, G-beta repeat 483 510 IPR001680 GO:0005515
Lja4g1995 761 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 729 761 - -
Lja4g1995 761 ProSiteProfiles Trp-Asp (WD) repeats profile. 479 510 IPR001680 GO:0005515
Lja4g1995 761 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 227 761 IPR044716 GO:0003714
Lja4g1995 761 Pfam LisH 11 36 IPR006594 GO:0005515
Lja4g1995 761 MobiDBLite consensus disorder prediction 383 421 - -
Lja4g1995 761 PANTHER LISH-SSDP-WD40 3 227 - -
Lja4g1995 761 PANTHER LISH-SSDP-WD40 227 761 - -
Lja4g1995 761 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 564 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1995 Lja-Chr4 20533702 20540677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1995 559 760 Miscellaneous Gene Families AT5G08390 23.558 1.00e-09 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lja4g1995 WD40 0.18 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1995 - - lja:Lj4g3v1801290.1 1468.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1995 4 20533702 20540677 Lja4g1995 4 20533702 20540677 ECH