Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1992 ATGGAGTTACTCATCACCCTCCTCGTTTTCCTACTGAGTTCCCGAGTCAACTCGGACCCAACTCAGGACAAGCAAGCTCTCCTTGCTTTCCTCTCCAAAACCCCACACTCCAACCGCGTCAACTGGAACGCTTCCGACTCCGCCTGCAACTGGGTCGGTGTCCAATGCGACGCTTCACGCTCCTTCGTCTACTCCCTCCGTCTCCCCGCCGTCGGCCTCGTCGGTAACCTCCCACCCAACACCATCAGCCGGTTATCCCAGCTCCGTGTCCTCAGCTTCCGCTCCAATGGCCTCACCGGCGAGATCCCTGCTGATTTCTCCAATCTCACCTTCCTCCGCAGCCTCTACCTCCAGAAGAATCAGCTCTCCGGCGAGTTCCCGCCTAGTCTCACTCGGTTAACTCGTTTGAATCGGTTAGATCTCTCCTCCAACAACTTCTCCGGCGCGGTTCCCTTCTCCATCAACAACCTCGCCAACCTCACCGGACTTTTCCTAGAGAATAACAAATTCTCCGGGAAGCTTCCGTCTGTCACGGCGAAACTGGTCGGGTTCAACGTTTCCAACAACCAGCTCAATGGTTCCATCCCGGAGACACTGTCGAGGTTCCCGGAAGCCTCATTCGCCGGAAACTTAGATCTCTGTGGACCGCCGTTGAAATCGTGCACACCGTTTTTTCCGGCGCCGGCGGAGTCACCGACGGCGATTCTGCCGGCGGGTCGCGTCGGGAAGAAGTCGAACAAGCTCTCCACGGGCGCCATTATCGCAATCGTGGTTGGGTCTTTTGTGGGTCTTGTACTGCTGCTGCTTCTGCTGTTTTGCTGCCTCAGGAAGCGGCGGCAACGGGGAGCGCCGAAGGCTCCGAAGCCGGTGGTGGCGGCGCGGTCGGTGCCGTCGGCGGAGGCAGGCACTTCATCCTCGAAGGATGACATCACGGGCGGGTCGGCGGAGGCGGAGAGGAACAAGCTTGTGTTCTTCGACGGCGGGATATACAGCTTCGATTTGGAGGATTTGTTGAGAGCTTCGGCGGAGGTTTTGGGGAAGGGGAGTGTGGGGACTTCTTACAAGGCGGTGTTGGAGGAAGGGACGACGGTGGTGGTGAAGAGGTTGAAGGATGTTGTAGTGAGTAAGAGAGAGTTTGAGGTGCAAATGGAGGTTCTGGGTAAGATTAAGCATGAAAATGTGGTTCCTCTGAGAGCTTTCTACTTCTCCAAGGATGAGAAATTGCTTGTCTACGATTACATGCCTGCTGGTAGCTTATCTGCTCTGCTTCACGGAAGTAGAGGATCTGGGCGAACTCCACTAGATTGGGATGGCAGAATGAGAATAGCACTAGGAGCATCAAGAGGGTTAGCATGCCTTCACATGTCAGGCAAGGTGGCTCACGGCAACATAAAATCATCCAACATCCTCCTCCGAGGAACGGACCACCACGCCTCCGTTTCAGACTTCGGTCTCAACCCCTTATTCGGAAATGGAGCCTCATCAAACCGTGTCGCAGGTTACCGGGCACCCGAAGTAGTAGAAACCAGGAAAGTGACCTTCAAGTCCGACGTGTACAGCTTCGGCGTGTTGTTATTGGAGCTACTAACAGGGAAAGCACCCAACCAAGCCTCTTTAGGAGAAGAGGGAATCGATCTCCCGAGGTGGGTCCAGTCCGTGGTTCGCGAGGAGTGGACCGCGGAGGTGTTCGATGCTGAGCTCATGAGGTTCCAAAACATCGAGGAGGAGATGGTTCAACTGTTGCAGATTGCAATGGCTTGCGTCTCAATTGTCCCCGATCAGAGGCCCACCATGCAGGACGTGGTGCGCATGATCGAGGACATGAACCGCGGTGAGACCGATGAGGGCATGCGACAATCCTCCGATGACCCTTCCAAAGAATCCGAGGGTCACACCCCACCTCAATCAAGGACTCCACCTAGATCATCACGCACACCGTAG 1941 0.5569 MELLITLLVFLLSSRVNSDPTQDKQALLAFLSKTPHSNRVNWNASDSACNWVGVQCDASRSFVYSLRLPAVGLVGNLPPNTISRLSQLRVLSFRSNGLTGEIPADFSNLTFLRSLYLQKNQLSGEFPPSLTRLTRLNRLDLSSNNFSGAVPFSINNLANLTGLFLENNKFSGKLPSVTAKLVGFNVSNNQLNGSIPETLSRFPEASFAGNLDLCGPPLKSCTPFFPAPAESPTAILPAGRVGKKSNKLSTGAIIAIVVGSFVGLVLLLLLLFCCLRKRRQRGAPKAPKPVVAARSVPSAEAGTSSSKDDITGGSAEAERNKLVFFDGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVSKREFEVQMEVLGKIKHENVVPLRAFYFSKDEKLLVYDYMPAGSLSALLHGSRGSGRTPLDWDGRMRIALGASRGLACLHMSGKVAHGNIKSSNILLRGTDHHASVSDFGLNPLFGNGASSNRVAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFQNIEEEMVQLLQIAMACVSIVPDQRPTMQDVVRMIEDMNRGETDEGMRQSSDDPSKESEGHTPPQSRTPPRSSRTP* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1992 646 CDD STKc_IRAK 345 608 - -
Lja4g1992 646 SUPERFAMILY L domain-like 23 202 - -
Lja4g1992 646 Gene3D Transferase(Phosphotransferase) domain 1 414 629 - -
Lja4g1992 646 MobiDBLite consensus disorder prediction 607 630 - -
Lja4g1992 646 MobiDBLite consensus disorder prediction 286 312 - -
Lja4g1992 646 PANTHER RECEPTOR-LIKE KINASE 6 633 - -
Lja4g1992 646 PANTHER OS05G0588300 PROTEIN 6 633 - -
Lja4g1992 646 Pfam Protein kinase domain 342 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1992 646 Gene3D Ribonuclease Inhibitor 20 180 IPR032675 -
Lja4g1992 646 Gene3D Phosphorylase Kinase; domain 1 307 413 - -
Lja4g1992 646 ProSiteProfiles Protein kinase domain profile. 339 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1992 646 SUPERFAMILY Protein kinase-like (PK-like) 343 608 IPR011009 -
Lja4g1992 646 Pfam Leucine rich repeat N-terminal domain 21 57 IPR013210 -
Lja4g1992 646 MobiDBLite consensus disorder prediction 631 646 - -
Lja4g1992 646 MobiDBLite consensus disorder prediction 607 646 - -
Lja4g1992 646 Gene3D Ribonuclease Inhibitor 181 221 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1992 Lja-Chr4 20486300 20490113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1992 18 626 Receptor kinase-like Gene Family AT5G58300 54.443 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja4g1992 Pkinase 1.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1992 - - gmx:100806857 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1992 4 20486300 20490113 Lja4g1992 4 20486300 20490113 ECH