Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1991 ATGGCATCCCCTTCTGAACTAAGCCTTGATTTCAAGCCACATAGCTACTCCATGCTACTGAAATCATTTGCTGATCAAAATGATCAAACCTACAAGCTTGAAGAGTTCCTTTCTCGCCTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTCACAAACGCCATGGAGGCTTCAAGGCAGCAACTTGAGAGCTTCAGAGTAAATAATCAAGACAACAGACCAGTTCTGGAGGAATTCATACCTGTGAAGCATTTAGCCTCTGATCAAAGCTCTGATCAGAAAGCAACAAACATATCTGATAATAAGGCAAATTGGATGACATCTGCTCAACTATGGAGCCAAGCAAGTGAAGCAATTACCAAACAACAATCCACAATCAAAGAGAGTGATGGTGATATGATTGGATTCAACAACACCAGCCCTAATAAGCTAGTTCTGGACAACAAACAGAGGAATGGTGGAGCCTTTCTACCATTCTCGAAAGAGCGAAACTCGCTGCAAGCTCTACCTGAGCTAGCCCTTGCTTCTGCTGAGAAAGAAATTGAGGATAAGAAACATGCAGATGGAGAGAAAGGAGGGTCTTCATGTCAGAAGAGGGAGAGTAATAATACAGGCAATAATGATGGAGTTGTGATTGATCAAGCTAAAGAAAATTCAGTAGCATCCCATGCTCAAAACACAAACAACAACAACAACACTCAAAATCAAAATCACAGGAAAGCAAGAAGGTGTTGGTCACCAGATTTGCACCGCAGATTTGTCAATGCCCTTCAAATGCTAGGTGGATCCCAAGTGGCAACTCCAAAACAGATAAGGGAGTTGATGAAGGTTGATGGTTTGACCAATGATGAAGTTAAAAGCCATCTGCAGAAATATAGGCTTCACACAAGGAGACCCAGTCCAAGCCCACAATCAGGTGCACCAGCAGCACAACTAGTGGTCCTCGGAGGAATCTGGGTCCCACCAGAATACGCTACGGCGGCGGGCCACACAGGCACCCCCACCCTCTACGGCGCACACCCTGCCTCTCACGGGCCACCACCACACTACTGCCCTCAGGAGTTCTATACCACAGCGCCACCACAACCATTGCTTCCGCCGCCTCCACGACACCAACACCACAATTATGTGTACAGGACCACTGCCCACGGCCATAGGTCACCGGAATCCGCAAGGGACCCGTCGGAGAGCATAGAGGATGGGAAGTCAGAGAGTAGCAGCTGGAAGGGTGAGAGTGAAGGGGACAGAAAAGGGCTGGCTGCAGAGAGTAATGAGAGTGAGATCACTCTCAAATTCTAA 1329 0.4733 MASPSELSLDFKPHSYSMLLKSFADQNDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLESFRVNNQDNRPVLEEFIPVKHLASDQSSDQKATNISDNKANWMTSAQLWSQASEAITKQQSTIKESDGDMIGFNNTSPNKLVLDNKQRNGGAFLPFSKERNSLQALPELALASAEKEIEDKKHADGEKGGSSCQKRESNNTGNNDGVVIDQAKENSVASHAQNTNNNNNTQNQNHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQSGAPAAQLVVLGGIWVPPEYATAAGHTGTPTLYGAHPASHGPPPHYCPQEFYTTAPPQPLLPPPPRHQHHNYVYRTTAHGHRSPESARDPSESIEDGKSESSSWKGESEGDRKGLAAESNESEITLKF* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1991 442 Coils Coil 33 53 - -
Lja4g1991 442 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 442 - -
Lja4g1991 442 MobiDBLite consensus disorder prediction 395 432 - -
Lja4g1991 442 Pfam Myb-like DNA-binding domain 252 303 IPR001005 -
Lja4g1991 442 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 442 IPR044787 GO:0003700|GO:0006355
Lja4g1991 442 Gene3D - 249 307 - -
Lja4g1991 442 Coils Coil 58 78 - -
Lja4g1991 442 MobiDBLite consensus disorder prediction 190 205 - -
Lja4g1991 442 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 250 305 IPR006447 GO:0003677
Lja4g1991 442 MobiDBLite consensus disorder prediction 190 254 - -
Lja4g1991 442 MobiDBLite consensus disorder prediction 346 442 - -
Lja4g1991 442 MobiDBLite consensus disorder prediction 206 250 - -
Lja4g1991 442 SUPERFAMILY Homeodomain-like 248 308 IPR009057 -
Lja4g1991 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 247 307 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1991 Lja-Chr4 20464075 20467449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1991 1 442 G2-like Transcription Factor Family AT2G03500 52.442 5.27e-130 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja4g1991 Myb_DNA-binding 9.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1991 - - lja:Lj4g3v1802450.2 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1991 4 20464075 20467449 Lja4g1991 4 20464075 20467449 ECH