Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1990 ATGACTCTGGACGACGATAGCTCCATCTATGTTGGTGGTCTTCCCTACGACGCCTCCGAAGACACCATTCGCACTGTCTTCAATTTGTATGGCGCCATTCTTGATGTCAAGATTATTAATGACCAGCGCACTAGGGGAAAATGCTATTGTTTTGTTACTTTCACGAATCCTAGGTCAGCTATTGATGCAATCAACGACATGAATGGCAGAACTATTGGTGGGCGTGTGGTTAAAGTTAATGGAGTGAAGTCCCGTGGTGGTAGATCGAATTTTGGCAGAGAACGTCAGTATTATCATAACGACGAGAGGAATGGAGACTGGGATCGGGGCAGGGAACGAGACCGGGATTACGATCATGATAATGATAGGGATGGATACAGGAATCGGAGCAGGGATAGGTCCCGAGACCGTGATAGGTCCCGAGACCATGACATAGACAGGGACAGGGACAGGGACAGAAGAGTTGAACATAAGCATGATTATGATCAAGATAGAGAACCTATGTTAGATGAAGATTGGAGTCGTGAGGACGATAGGGCTGAAATTGAACAAGAAAATGGAAGGGAACATGGTGGAGATGTGGATAGAGACCACAACTTGGATGCGGACAGAGAAAGGAAGATGGATAGGACCAGTGATCTTGATAGAAGTTTTGATGAGCATAGAAAAGAACAGAGTTGGCGGAACATTGATTTGAATGTACCGAATCAACATAGCAGGGATCTTTCATCAGACTCAAATGATAATCACAATGATCAGTTAGAAGATGAGTTAGAGAGGTCAACACAACAGCTTGATCAACTAAAAGAGGAGGTTTGTCAATTGATGGAGGGATTGGAAGAGAAGAAACAGAATGTTTCGGAGTTACAGAAGGAATCTAAGAAACTCGAGGACGCAGTTATCACTGCGAAGAAACGCACTTCACATCGTCAGATGCAGTTGGCCAAGCTGCATAAATATTTTCTGCAAGTGAAAGATTGCACTGAAAGACTCAAAACCAGTGAAAAAGAACTTCAGGCTCTAATTGATACAGTAATTATTGAGAGTGATGGTGATTGTGTTGGACAACTTACAAATGGAAGCCTTGATGGTAGATAG 1098 0.4335 MTLDDDSSIYVGGLPYDASEDTIRTVFNLYGAILDVKIINDQRTRGKCYCFVTFTNPRSAIDAINDMNGRTIGGRVVKVNGVKSRGGRSNFGRERQYYHNDERNGDWDRGRERDRDYDHDNDRDGYRNRSRDRSRDRDRSRDHDIDRDRDRDRRVEHKHDYDQDREPMLDEDWSREDDRAEIEQENGREHGGDVDRDHNLDADRERKMDRTSDLDRSFDEHRKEQSWRNIDLNVPNQHSRDLSSDSNDNHNDQLEDELERSTQQLDQLKEEVCQLMEGLEEKKQNVSELQKESKKLEDAVITAKKRTSHRQMQLAKLHKYFLQVKDCTERLKTSEKELQALIDTVIIESDGDCVGQLTNGSLDGR* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1990 365 Coils Coil 251 306 - -
Lja4g1990 365 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Lja4g1990 365 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 361 - -
Lja4g1990 365 CDD RRM_SF 9 80 - -
Lja4g1990 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Lja4g1990 365 Gene3D - 2 98 IPR012677 -
Lja4g1990 365 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 361 - -
Lja4g1990 365 MobiDBLite consensus disorder prediction 82 262 - -
Lja4g1990 365 MobiDBLite consensus disorder prediction 243 262 - -
Lja4g1990 365 MobiDBLite consensus disorder prediction 88 228 - -
Lja4g1990 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Lja4g1990 365 Coils Coil 324 344 - -
Lja4g1990 365 SMART rrm1_1 8 80 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1990 Lja-Chr4 20457980 20463264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1990 7 79 Eukaryotic Initiation Factors Gene Family AT1G22760 32.877 1.27e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1990 - - gmx:100816804 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1990 4 20457980 20463264 Lja4g1990 4 20457980 20463264 ECH