Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1984 ATGGAGAAGAAGAAGGTGGCGGTTCCGCTGGTGTGCCACGGCCACTCTCGTCCGGTGGTGGATCTCTTCTACAGTCCCGTTACGCCTGATGGCTTCTTCCTCATCAGTGCTAGCAAGGACTCTAGCCCTATGCTCAGAAATGGTGAGACTGGAGACTGGATTGGAACATTTGAAGGGCACAAAGGGGCCGTGTGGAGTTGCTGCTTGGATACTAATGCCTTACGTGCTGCATCTGCTTCTGCTGATTTCTCAACGAAAGTTTGGGACGCTTTGACAGGAGATGAATTACACTCTTTTGAGCATAAGCACATTGCTCGAGCTTGTGCTTTTTCTGAGGATACTCACCTTTTGCTCACTGGGGGAGTAGAGAAAATTCTCCGAATCTATGATATGAACCGGCCTGATGCACCACCTAGAGAAGTGGATAAATCCCCTGGTTCAGTGAGAACTGTTGCATGGCTTCACAGTGACCAGACCATATTGAGTTCTTGTACTGATATGGGAGGTGTCAGGTTATGGGATGTAAGAAGTGGTAAAATAGTTCAGACACTCGAAACTAAGTCATCTGTGACAAGTGCAGAAGTGAGTCAAGATGGCCGATATATTATAACTGCTGATGGTTCTACAGTTAAGTTTTGGGATGCAAATTACTATGGAATGGTGAAGAGTTATGATATGCCCTGCACTGTGGAATCAGCTTCATTAGAGCCAAAGTACGGGAACAAATTCGTTGCTGGGGGAGAAGATATGTGGGTTCGTGTTTTTGATTTCCACACAGGCAATGAGATTGCATGCAACAAGGGCCACCATGGTCCTGTCCACTGTGTCCGTTTTTCTCCTGGAGGAGAATCCTATGCCTCAGGATCTGAGGATGGAACCATCAGAATATGGCGGACAGGCCCATTGACTCATGATGAGTCCGAGGATTTATCTGCAAATGGATCAATTGATAAGGTGAAGGTAACTGCCGATGAGGTTTCACGCAAGATTGAGGGTTTTCACATTGCGGATGAGGGGAAACCCAAAGAAAAGGAAGAGGCAGGGGAGGAATGA 1053 0.4701 MEKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAASASADFSTKVWDALTGDELHSFEHKHIARACAFSEDTHLLLTGGVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKIVQTLETKSSVTSAEVSQDGRYIITADGSTVKFWDANYYGMVKSYDMPCTVESASLEPKYGNKFVAGGEDMWVRVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWRTGPLTHDESEDLSANGSIDKVKVTADEVSRKIEGFHIADEGKPKEKEEAGEE* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1984 350 SUPERFAMILY WD40 repeat-like 6 297 IPR036322 GO:0005515
Lja4g1984 350 Gene3D - 9 320 IPR015943 GO:0005515
Lja4g1984 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 297 IPR001680 GO:0005515
Lja4g1984 350 PANTHER OS02G0205400 PROTEIN 1 344 - -
Lja4g1984 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 297 - -
Lja4g1984 350 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 344 - -
Lja4g1984 350 SMART WD40_4 50 89 IPR001680 GO:0005515
Lja4g1984 350 SMART WD40_4 92 130 IPR001680 GO:0005515
Lja4g1984 350 SMART WD40_4 134 174 IPR001680 GO:0005515
Lja4g1984 350 SMART WD40_4 259 298 IPR001680 GO:0005515
Lja4g1984 350 SMART WD40_4 177 214 IPR001680 GO:0005515
Lja4g1984 350 SMART WD40_4 5 47 IPR001680 GO:0005515
Lja4g1984 350 SMART WD40_4 217 256 IPR001680 GO:0005515
Lja4g1984 350 CDD WD40 14 298 - -
Lja4g1984 350 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Lja4g1984 350 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Lja4g1984 350 Pfam WD domain, G-beta repeat 265 297 IPR001680 GO:0005515
Lja4g1984 350 Pfam WD domain, G-beta repeat 179 214 IPR001680 GO:0005515
Lja4g1984 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1984 Lja-Chr4 20387752 20392574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1984 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 27.607 1.75e-38 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1984 K13137 - gmx:100818422 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1984 4 20387752 20392574 Lja4g1984 4 20387752 20392574 ECH