Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1982 ATGAAAGGGGAAGTGCAACTCCAACCTCCTCCGATTATGCAAAACCCTAGTGATTCCGACCCTTTACTCCTTGACCATGATGAGGATGAGTCCCCTTTGAGCTCTGCTGAGATTAAGGATGAGGAGGATGTTGAGGCTGGTTCACTCCCTTGTTGTCGAATTTGCCTCGAAAGCGATTCCGACCCAGAAGATGAATTGATATCTCCATGCATGTGCAAAGGGACCCAGCAGTTCGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTTAAGGAAGGATTTGCCTTCTCACACTGTACCACCTGCAAGGCCCAATTTCATCTTAGAGTTGAATCGTATGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTGTTGCTGTACAAACTGTGATTGCTGCTATTGGTGGCTTTGCCTACATCATGGACAAAGATGGGACCTTCAGAAACTCATTTGATGATGGTTGGGATAGGATACTGTCAAAGCATCCTATACCATTTTATTATTGTATAGGAGTGCTGGCCTTCTTTGTACTGATTGGATTTTTTGGTCTCATACTGCACTGCTCCTCACTCAATTCCAATGATCCCAGAATGGCTGGCTGTCAGAACTGTTGTTATGGATGGGGCATCCTGGATTGCTTTCCTGCATCAGTGGAAGCGTGCTTCGCTCTCGTGGTTGTTTTTGTTGTCATCTTTGCAATTCTTGGTATAGCTTACGGTTTTCTTGCAACCACCATGGCCATTCAAAGAATTTGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGGAGTACATAGTGGAGGATCTTGGAGGATGTTATTCCCCACCAAAGTTAGACCCTGAACATGAAGCTCGCTTGAAAATGCTTAAGCTTTTGTGA 924 0.4491 MKGEVQLQPPPIMQNPSDSDPLLLDHDEDESPLSSAEIKDEEDVEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASVEACFALVVVFVVIFAILGIAYGFLATTMAIQRIWQRHYHILTKRELTKEYIVEDLGGCYSPPKLDPEHEARLKMLKLL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1982 307 SUPERFAMILY RING/U-box 49 107 - -
Lja4g1982 307 MobiDBLite consensus disorder prediction 26 41 - -
Lja4g1982 307 MobiDBLite consensus disorder prediction 1 41 - -
Lja4g1982 307 CDD RING_CH-C4HC3_MARCH 52 103 - -
Lja4g1982 307 ProSiteProfiles Zinc finger RING-CH-type profile. 44 109 IPR011016 GO:0008270
Lja4g1982 307 SMART ringv_2 51 103 IPR011016 GO:0008270
Lja4g1982 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 116 IPR013083 -
Lja4g1982 307 Pfam RING-variant domain 52 102 IPR011016 GO:0008270
Lja4g1982 307 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 307 - -
Lja4g1982 307 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1982 Lja-Chr4 20377098 20380861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1982 1 307 C3H Transcription Factor Family AT1G11020 79.439 7.85e-172 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1982 - - gmx:100782178 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1982 4 20377098 20380861 Lja4g1982 4 20377098 20380861 ECH