Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1981 ATGGTGATGCCGGCGATGATGATGTGCGGCGAGGAAGAGCTTGAGCTGTCAAGAGACGGCAGCCACTACAGTCTCTCCACCGGGATTCTGCCTTCTCTCGGCGCTAGAAGTAACCGCCGGATTAAGCTTCGGCCTTTCATTGTGTCACCCTATGACCGCCATTACAGGATATGGGAAACTTTCCTTGTTATTCTGGTTGTTTACACTGCTTGGGTATCTCCCTTTGAATTTGGATTCCTTAAGAAACCTCAACCACCGCTTTCTGTTACGGATAATATTGTCAATGGAATCTTCTTTCTGGATATATTTCTCACCTTCTTTGTAGCTTATGTCGACAAAACTACCTATTTGTTCGTTGATAACCCGAAACAGATTGCTTGGAGATATGTTCGTACTTGGTTCGCCTTGGATGTTGTCTCTATCATTCCTTCGGAGCTTGTTTCAAAGTTATCGTCTTCTCCTATCCAAAGTTATGGCCTATTCAACATGCTTCGGCTCTGGCGTCTTCGAAGAGTTAGTGCTTTGTTTTCAAGGCTTGAGAAGGACAGAAAATTTAACTATTTCTGGGTTCGGTGTGCTAAGCTCATATGTGTTACCCTCTTTGCTGTTCATTGTGCTGCATGCTTTTATTATCTTATTGCTGCACGTTATCATGACCCCAAAAGGACATGGATTGGGGAAACTATGGAAAATTTCCTTGAGCAAAGCTTGTGGACAAGATATGTGACGTCTATTTACTGGTCTATTACTACTTTAACAACAGTAGGTTATGGAGATTTGCACCCAGTGAATGAAAGGGAGATGATATTTGACATCTTTTACATGCTCTTCAATCTTGGATTAACAGCATATCTGATTGGTAATATGACCAACTTAGTTGTCCATGGCACAAGTCGAACCAGAAAATTTAGGGATACCATACAAGCTGCCTCTAGTTTTGCTCAAAGGAACCAATTGCCGCCGCGTCTGCAAGAACAAATGCTTGCTCACTTGTGTTTGAAGTACAGAACAGACTCAGAAGGGTTGCAGCAGCAAGAGACACTTGATTCTCTTCCTAAAGCCATTAGATCAAGCATTTCTCATCATCTTTTCTATTCACTGATTGATAAGGTCTACTTGTTTAATGGAGTTTCACACGACTTGCTCTTTCAATTGGTGTCAGAGATGAAAGCTGAGTACTTTCCTCCCAAAGAAGATGTAATTTTGCAAAATGAAGCCCCCACTGATTTTTATATACTAGTCACTGGTGCAGTGGACCTCCTAGTTCTTAAAAATGGACTTGAACAGGTTGTTGGAGAGGCAAAAACTGGAGATATTTGTGGTGAGATTGGTGTTCTTTGCTATAAGCCACAGCATTTCACTGTTCGAACTAAGCGTTTAAGCCAGCTGCTGAGGTTGAACCGCACTACATTCTTGAATATTATTCAGGCCAATATTGGGGACGGAGCCATTATCATGAATAATCTCCTTCAGCATTTTAAAGAGCTCAAGGATCCAATAATGGAGGGAGTCTTGGTGGAAATTGAGAACATGTTAGCTCGTGGTAGGATGGACCTACCGCTACCGGTAAGTCTATGCTTCGCAGCAGAGATAGGAGATGATTTGTTGATAGATCAATTGCTAAAACGAGGTCTGGATCCAAATGAATCTGACAACAATGGGAAAACAGCTTTGCATTTAGCAGCATCCAAAGGAAAAGAGAACTGTGTTCTGCATCTGTTAGATTCTGGGGCAGATCCTAATATTAGAGATTCGGAAGGAAATGTGCCACTGTGGGAGGCCATAGTTGGTGGACATGAATCAGTGGCTAAGCGGTTATTACAAAATGGTGCAACCTTGCGCTGCGGTGATGTGGGTCAATATGCATGCACTGCAGCAGAACAGAACAATCTCAACTTGCTCAAAGACATACTGCGTTACGGAGGAGACATCACACTCCCGAGCACCAACAATGGGACCACAGCTTTGCATGTTGCAGTCTCAGAAGACAATGCTGAGATTGTCAAGTTCCTTTTGGATCGCGGGGCGAACGTGGACAAGCCAGATAAGTATGGTTGGACCCCAAGAGAGCTAGCAGATCAGCAGGGACATCAAGAGATTAAAGCCATTTTTGACTCCAGTGTGGAGCCAAAGTCTCAGTCTTTTGGTGCTATACCTGAGGGGCAGAGTAATAAGATCAGGTTCCTTGGTAGATTCACAAGTGAGCCAACAATGCCTTCACCAAATGAGGGCTCATTTCATCGAACAGACGGCAGTTGGAACCAGAGCCGTCCAAGGCGAAAGAGCAATAACATCCATAACTCACTCTTTGGGATCATGTCAGCTGCACACAAAGGGGAAAATGACCTGCAATTCCCTCTTGACGTGACTAGCTATACAAGGCATAATAGTGTGAAGAGTAGTAGAGTGAGCCAAACTAGAGTAACAGTAAGTTGCCCTGAAAAGGATGAGGTTGCTGGGAAGCTTGTGTTGCTACCTGGAAGCTTTAAAGAGCTGCTTGAGATTGGAGCCAAGAAATTTGGTATCTTCCCTGCTAAGGTTGTAAACAAAGATGGTGCTGAAATTGATGACATTGAAGTGATTAGAGATGGGGATCATCTTGTTTTTGTCAGTGTTGGGGTGCAAGAGTCCAATTCTCCGAATGGGGTACTTCCTTAA 2658 0.4353 MVMPAMMMCGEEELELSRDGSHYSLSTGILPSLGARSNRRIKLRPFIVSPYDRHYRIWETFLVILVVYTAWVSPFEFGFLKKPQPPLSVTDNIVNGIFFLDIFLTFFVAYVDKTTYLFVDNPKQIAWRYVRTWFALDVVSIIPSELVSKLSSSPIQSYGLFNMLRLWRLRRVSALFSRLEKDRKFNYFWVRCAKLICVTLFAVHCAACFYYLIAARYHDPKRTWIGETMENFLEQSLWTRYVTSIYWSITTLTTVGYGDLHPVNEREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPPRLQEQMLAHLCLKYRTDSEGLQQQETLDSLPKAIRSSISHHLFYSLIDKVYLFNGVSHDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGLEQVVGEAKTGDICGEIGVLCYKPQHFTVRTKRLSQLLRLNRTTFLNIIQANIGDGAIIMNNLLQHFKELKDPIMEGVLVEIENMLARGRMDLPLPVSLCFAAEIGDDLLIDQLLKRGLDPNESDNNGKTALHLAASKGKENCVLHLLDSGADPNIRDSEGNVPLWEAIVGGHESVAKRLLQNGATLRCGDVGQYACTAAEQNNLNLLKDILRYGGDITLPSTNNGTTALHVAVSEDNAEIVKFLLDRGANVDKPDKYGWTPRELADQQGHQEIKAIFDSSVEPKSQSFGAIPEGQSNKIRFLGRFTSEPTMPSPNEGSFHRTDGSWNQSRPRRKSNNIHNSLFGIMSAAHKGENDLQFPLDVTSYTRHNSVKSSRVSQTRVTVSCPEKDEVAGKLVLLPGSFKELLEIGAKKFGIFPAKVVNKDGAEIDDIEVIRDGDHLVFVSVGVQESNSPNGVLP* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1981 885 ProSiteProfiles KHA domain profile. 807 885 IPR021789 -
Lja4g1981 885 ProSiteProfiles Ankyrin repeat profile. 651 683 IPR002110 GO:0005515
Lja4g1981 885 ProSiteProfiles Ankyrin repeat region circular profile. 651 683 - -
Lja4g1981 885 SMART cnmp_10 373 490 IPR000595 -
Lja4g1981 885 Gene3D - 521 705 IPR036770 -
Lja4g1981 885 SMART ANK_2a 651 680 IPR002110 GO:0005515
Lja4g1981 885 SMART ANK_2a 520 549 IPR002110 GO:0005515
Lja4g1981 885 SMART ANK_2a 586 615 IPR002110 GO:0005515
Lja4g1981 885 SMART ANK_2a 553 582 IPR002110 GO:0005515
Lja4g1981 885 Pfam Ion transport protein 56 300 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja4g1981 885 ProSiteProfiles Ankyrin repeat region circular profile. 553 584 - -
Lja4g1981 885 ProSiteProfiles Ankyrin repeat profile. 553 585 IPR002110 GO:0005515
Lja4g1981 885 ProSiteProfiles Ankyrin repeat profile. 586 618 IPR002110 GO:0005515
Lja4g1981 885 ProSiteProfiles cAMP/cGMP binding motif profile. 373 475 IPR000595 -
Lja4g1981 885 SUPERFAMILY Voltage-gated potassium channels 50 294 - -
Lja4g1981 885 MobiDBLite consensus disorder prediction 733 762 - -
Lja4g1981 885 ProSiteProfiles Ankyrin repeat region circular profile. 586 613 - -
Lja4g1981 885 Pfam Cyclic nucleotide-binding domain 393 478 IPR000595 -
Lja4g1981 885 Pfam Ankyrin repeats (3 copies) 625 700 IPR002110 GO:0005515
Lja4g1981 885 Pfam Ankyrin repeats (3 copies) 525 613 IPR002110 GO:0005515
Lja4g1981 885 PRINTS EAG/ELK/ERG potassium channel family signature 91 101 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja4g1981 885 PRINTS EAG/ELK/ERG potassium channel family signature 241 258 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja4g1981 885 PRINTS EAG/ELK/ERG potassium channel family signature 267 278 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja4g1981 885 PRINTS EAG/ELK/ERG potassium channel family signature 102 111 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja4g1981 885 PRINTS EAG/ELK/ERG potassium channel family signature 285 294 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja4g1981 885 PRINTS EAG/ELK/ERG potassium channel family signature 68 75 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja4g1981 885 PRINTS Ankyrin repeat signature 667 681 IPR002110 GO:0005515
Lja4g1981 885 PRINTS Ankyrin repeat signature 554 569 IPR002110 GO:0005515
Lja4g1981 885 CDD CAP_ED 373 478 IPR000595 -
Lja4g1981 885 Gene3D - 57 294 - -
Lja4g1981 885 PANTHER K+ TRANSPORTER 1-RELATED 12 873 - -
Lja4g1981 885 Pfam KHA, dimerisation domain of potassium ion channel 807 869 IPR021789 -
Lja4g1981 885 Gene3D Jelly Rolls 337 497 IPR014710 -
Lja4g1981 885 PANTHER POTASSIUM CHANNEL AKT1 12 873 IPR045319 GO:0005249|GO:0006813
Lja4g1981 885 SUPERFAMILY Ankyrin repeat 524 704 IPR036770 -
Lja4g1981 885 SUPERFAMILY cAMP-binding domain-like 298 492 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1981 Lja-Chr4 20361451 20368435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1981 15 869 Ion Channels AT2G25600 63.310 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1981 K21867 - gmx:100819491 1446.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1981 4 20361451 20368435 Lja4g1981 4 20361451 20368435 ECH