Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1971 ATGGAGGATAAGAAAGTTAACACGATCGCTGTTATCTCAGTGATTGTGTTGATCACCGTCGTCATCGTCGCTCGTGTCTCATTGAAGCTCTCCAGAGCGTTCTTCCTCATCTGCGGCGCCTCCGTCGCCGTCATCCTCGCCGTATTCTCCTGCGTTTTCATCCGCCACCGTTACCACCGGCGCCGGAGGGTGCTTGAGTCGCAGCTGAAAACAGAAGGCAGAGAGCTTCGAATCGAGTACAGTTTTCTGCGAAAAGTCGCCGGAGTTCCCACCAAGTACCGGTTCAAGGAGCTTGAAGAAGCCACCGATGGGTTTCAGGCGTTGATCGGAAGAGGGTCATCTGCTTCGGTTTTCAAAGGCATTCTCAGCGACGGAACTTCCGTCGCCGTGAAACGAATCGACGGTGAGGATCGTGGCGAGAGGGAGTTCAGATCGGAGGTTGCAGCGATTGCTAGTGTGCAGCATGTGAATCTGGTGAGGCTGTTTGGGTATTGCAATGCTCCTTCAGCTCCAAGGTACCTTGTTTATGCGTTTATTCCAAATGGGTCTTTGAATTGCTGGATTTTTCCTGAAAGGGTTGAAGGAACTCGGGTTCGTCGCGGCGGTTGTTTGCCGTGGAATTTGAGGTATAGAGTGGCTATTGATGTGGCCAAAGCGCTTAGCTACCTTCACCATGATTGTAGGTCAAGGGTTTTGCACCTTGATGTGAAGCCTGAGAATATTCTCTTGGATGAGGATTACAAAGCGGTTGTTTCTGATTTTGGTTTGTCTAAGCTTGTTGATAAAGATGTGAGTCAGGTTATGACAAATATTAGAGGAACTAGAGGGTATTTAGCACCTGAATGGTTATTGGAGAGAGGGGTTTCAGAGAAGACTGATATATATAGCTATGGGATGGTTTTGTTGGAGATGATTGGAGGGAGGAGGAATGTGTCAAGGGTGGAGGATCCTAAGGAAAAGGGTAGGATGAAATGGGAGTTTTTTCCTAAGATTGTGAATGAGAAGGTGAAGGAAGGGAAGTTCATGGAGATTGTGGATAAAAGGATGGTGGAGAGAGGGGGTGTTGTTGATGAGGGTGAGGTGGGGAGATTGGTGAATATTGCTTTGTGGTGTATTCAGGAGAAGCCAAGGTTGAGGCCTAGCATGGCAGAAGTGGTGGATATGCTTGAACGGCGTGTGAGGGTGGAGGAGCCGCCGAGTAGTAGAATGATTCTTGTTGATTTGCTGTCTGTGGATGAAGACCCTGCTGATCATAATAATCTGGCAAGGTTATTGACTTCTATGTCAAGCCATGAAGATCGTGTATCTACTTACTCAATGGGAACCTCTATTTTATCTGCCAGATAA 1347 0.4781 MEDKKVNTIAVISVIVLITVVIVARVSLKLSRAFFLICGASVAVILAVFSCVFIRHRYHRRRRVLESQLKTEGRELRIEYSFLRKVAGVPTKYRFKELEEATDGFQALIGRGSSASVFKGILSDGTSVAVKRIDGEDRGEREFRSEVAAIASVQHVNLVRLFGYCNAPSAPRYLVYAFIPNGSLNCWIFPERVEGTRVRRGGCLPWNLRYRVAIDVAKALSYLHHDCRSRVLHLDVKPENILLDEDYKAVVSDFGLSKLVDKDVSQVMTNIRGTRGYLAPEWLLERGVSEKTDIYSYGMVLLEMIGGRRNVSRVEDPKEKGRMKWEFFPKIVNEKVKEGKFMEIVDKRMVERGGVVDEGEVGRLVNIALWCIQEKPRLRPSMAEVVDMLERRVRVEEPPSSRMILVDLLSVDEDPADHNNLARLLTSMSSHEDRVSTYSMGTSILSAR* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1971 448 SUPERFAMILY Protein kinase-like (PK-like) 86 390 IPR011009 -
Lja4g1971 448 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Lja4g1971 448 Gene3D Phosphorylase Kinase; domain 1 67 178 - -
Lja4g1971 448 Pfam Protein kinase domain 108 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1971 448 SMART serkin_6 103 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1971 448 ProSiteProfiles Protein kinase domain profile. 103 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1971 448 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 448 - -
Lja4g1971 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Lja4g1971 448 PANTHER RECEPTOR-LIKE KINASE 1 448 - -
Lja4g1971 448 Gene3D Transferase(Phosphotransferase) domain 1 179 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1971 Lja-Chr4 20188594 20190497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1971 1 401 Receptor kinase-like Gene Family AT5G20050 64.268 2.62e-179 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Lja4g1971 Pkinase 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1971 - - gmx:100779485 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1971 4 20188594 20190497 Lja4g1971 4 20188594 20190497 ECH