Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1966 ATGGCCACCTCCACAACCACCACCACACCCTGCAGAGATGAACCCGACTACGACAGCAGCTCCTCCTCAATCACCACCGTCCCTGAATCAACCCGGAGCTGGATGACCAACCTCAGCTTCGGCAGCCGCCCTCGCCGGAGCTCTGTCTCTGTCTGCTCCACCACAACAGACACCTCCTTTCTGTTCCCTGGCTCTCACGCCAAGCCCCATAAGGCAAACCAAGCCGCCTGGGAGGCCATGAGGCGACTCCGAAGCGACAAAGGCCGCCTCGGACTCGAACACTTCCGCCTCCTGCGGCGGCTTGGAAGCGGCGACATCGGCAATGTCTACCTCTGCCAGATAAGGAACCCCGTGGTGGGGTTGCCGCAGTGCTTCTACGCCATGAAAGTGGTGGACAGAGAAGCACTTGCCATAAGGAAGAAGCTTCAGAGAGCAGAGATGGAGAAAGAGATTCTGGGCATGCTTGATCACCCTTTTTTGCCTACTTTGTATACTGAGTTTGATGCTTCTCATTATTCATGCTTGGTCATGGAGTTTTGTCCCGGTGGTGACTTGTATGCTGCTCGCCAACGCCAGCCAGGGAAACGCTTTACCATATCATCCACTAAGTTCTATGCAGCCGAGACACTTTTGGCACTGGAGTATCTTCACATGATGGGAATAGTGTACAGGGATTTGAAGCCAGAAAATGTGTTAGTTAGAGAGGATGGTCACATCATGCTTTCAGATTTCGACCTTTCTCTCAAATGTGACGTCGTTCCTAAGCTTTTAAGGAGCAAAACAAAGTTGGAGAGGAGCATCAAGAGCACAAAGAGATCTTCCCCTGCTTGCTCTGCCCCCATGCACCCTGTTTTGTCCTGTTTCTCAAGCAAGAAAAAGAAAGCAGCAACATTGACAACACTCATAAGAGAAAACGTTGTTGATGAGGAACAAGAAATTGATGAAGATCCTGAGCTTGTGGCAGAGCCAATTGATGCAAGGTCCAAGTCATTTGTGGGGACACATGAGTATTTAGCACCAGAAGTGATTTTGGGACAAGGGCATGGTAGTGCAGTGGATTGGTGGACTTTTGGGGTGTTTTTGTATGAGATGTTGTATGGGAGAACACCCTTTAAAGGTGAGAACAATGAGAAGACACTGGTGAACATTCTGAAGCAGCCATTGAGTTTTCCTAGGATTGCAGTGAGTAGTAGTGAAGAGTTTGAGGAGATGGTGAGGGTTCAGGAGCTTATTAGCAAGCTGTTGGTGAAGAATCCAAATAAGAGAATTGGAAGCTGCATGGGTTCTGTTGAGATCAAGAGGCATGAGTTCTTCAAGGGTGTGAATTGGGCTTTGATTAGATCAGTTAGACCCCCTGAGGTCCCTGCTTATACGAACAAGATTAGGAGTAGGGTCTTGGTGCCCAAATTAAGCAAGAAAGAGAGGGATCAGCCATTTCAGCTTACTCATCATTTTGAATACTTCTAA 1467 0.4867 MATSTTTTTPCRDEPDYDSSSSSITTVPESTRSWMTNLSFGSRPRRSSVSVCSTTTDTSFLFPGSHAKPHKANQAAWEAMRRLRSDKGRLGLEHFRLLRRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDREALAIRKKLQRAEMEKEILGMLDHPFLPTLYTEFDASHYSCLVMEFCPGGDLYAARQRQPGKRFTISSTKFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTKLERSIKSTKRSSPACSAPMHPVLSCFSSKKKKAATLTTLIRENVVDEEQEIDEDPELVAEPIDARSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLSFPRIAVSSSEEFEEMVRVQELISKLLVKNPNKRIGSCMGSVEIKRHEFFKGVNWALIRSVRPPEVPAYTNKIRSRVLVPKLSKKERDQPFQLTHHFEYF* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1966 488 ProSiteProfiles Protein kinase domain profile. 95 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1966 488 CDD STKc_phototropin_like 94 456 - -
Lja4g1966 488 Gene3D Phosphorylase Kinase; domain 1 93 179 - -
Lja4g1966 488 Coils Coil 128 148 - -
Lja4g1966 488 Pfam Protein kinase domain 328 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1966 488 Pfam Protein kinase domain 96 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1966 488 Gene3D Transferase(Phosphotransferase) domain 1 180 249 - -
Lja4g1966 488 SMART serkin_6 95 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1966 488 SUPERFAMILY Protein kinase-like (PK-like) 77 462 IPR011009 -
Lja4g1966 488 MobiDBLite consensus disorder prediction 1 28 - -
Lja4g1966 488 PANTHER FLIPPASE KINASE 1-RELATED 11 488 - -
Lja4g1966 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Lja4g1966 488 PANTHER PROTEIN KINASE PINOID 2 11 488 - -
Lja4g1966 488 Gene3D Transferase(Phosphotransferase) domain 1 325 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1966 Lja-Chr4 20131763 20133968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1966 13 488 AGC Kinase Gene Family AT2G26700 58.333 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja4g1966 Pkinase 3.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1966 K08286 - gmx:100777988 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1966 4 20131763 20133968 Lja4g1966 4 20131763 20133968 ECH