Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1959 ATGACTTTCCCTGATCACCTTCCAACTTTTGCGATGATGTCGCCGGCGCGATTTTCATCGGACAGTGACGCCATTGATGTGAGGCATCAATTCCCAATGAGCAACGAACCATTGAACCCACGTTCAGGGTTTGATCAAGCCCCTCCATTCAAAAGGGCCAGGAATTTTGACAATGGCCACTCCAATGGCTTGTCAGGCCCTCCCAGGGCGAATCAGCAGCCGCAGAATTCCCAACCCAACCGTGGAACGAGCCACATTTTCTTCAAGACCCGCCTTTGTGCCAAGTTCAGACATGGTTCTTGTAGGAACGGTGAGACTTGCAACTTTGCTCATGGTGTTGATGACATGAGGCAGCCACCGCCAAATTGGCAGGAGATTGTTGGCTTGCGCGGGGGTGATGAACGGCCATTGTCGGGGAATTGGGATGATGACCAGAAAATCATTCAAAAGATGAAGCTGTGCAAGAAGTATTACAATGGGGAGGAATGCCCTTATGGTGAAAAGTGCAGTTTTCTCCATGAAGACCCTGGCAAATTCAGGGATGATTCAGGGAGGTTCAGGGAGAGCTCGGCTATAAGCATCGGAACTAATGGATCTCCAAAGTCATATGGTGATGGCTCTAATAATTCTGAAGGTAATAGCAAGGCTGTGGACACAGGCTCAAACATTTCCAAGGGAAACGTAAAGTCCACTTACTGGAAGACTAAACTGTGCATCAAGTGGGATAAAACAGGGAACTGTCCCTTCGGGGAGGATTGTCACTTTGCTCATGGAGAAGGAGAGTTACAAGTTCCTGGTGGACGCACTGAAGTAGAAAGTGCTGCAGTTGCAACTTTACCAAAAGCCTTATCAGTTGCTGCCAATGAAGCAACTACTACCCATGCAGCAAGTGAAACTCCTATGGATGAAGATGAGCAGGCCAAGAAGCGTTTACAGAAGTGGAAAATAAACAAGAAGATCAATCGAATTTATGGTGATTGGATTGACGATTTACCTCTTGTTATTCCAAGTGAAATGGAGACATGA 1026 0.4708 MTFPDHLPTFAMMSPARFSSDSDAIDVRHQFPMSNEPLNPRSGFDQAPPFKRARNFDNGHSNGLSGPPRANQQPQNSQPNRGTSHIFFKTRLCAKFRHGSCRNGETCNFAHGVDDMRQPPPNWQEIVGLRGGDERPLSGNWDDDQKIIQKMKLCKKYYNGEECPYGEKCSFLHEDPGKFRDDSGRFRESSAISIGTNGSPKSYGDGSNNSEGNSKAVDTGSNISKGNVKSTYWKTKLCIKWDKTGNCPFGEDCHFAHGEGELQVPGGRTEVESAAVATLPKALSVAANEATTTHAASETPMDEDEQAKKRLQKWKINKKINRIYGDWIDDLPLVIPSEMET* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1959 341 SUPERFAMILY CCCH zinc finger 231 263 IPR036855 GO:0046872
Lja4g1959 341 MobiDBLite consensus disorder prediction 31 83 - -
Lja4g1959 341 SUPERFAMILY CCCH zinc finger 148 175 IPR036855 GO:0046872
Lja4g1959 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 259 IPR000571 GO:0046872
Lja4g1959 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 112 IPR000571 GO:0046872
Lja4g1959 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 149 173 IPR000571 GO:0046872
Lja4g1959 341 MobiDBLite consensus disorder prediction 58 83 - -
Lja4g1959 341 SMART c3hfinal6 148 175 IPR000571 GO:0046872
Lja4g1959 341 SMART c3hfinal6 232 259 IPR000571 GO:0046872
Lja4g1959 341 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Lja4g1959 341 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 332 - -
Lja4g1959 341 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Lja4g1959 341 MobiDBLite consensus disorder prediction 189 221 - -
Lja4g1959 341 ProSiteProfiles Zinc finger C3H1-type profile. 148 176 IPR000571 GO:0046872
Lja4g1959 341 Gene3D - 148 177 - -
Lja4g1959 341 Gene3D - 226 264 - -
Lja4g1959 341 Gene3D - 81 118 - -
Lja4g1959 341 SUPERFAMILY CCCH zinc finger 85 118 IPR036855 GO:0046872
Lja4g1959 341 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872
Lja4g1959 341 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 332 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1959 Lja-Chr4 20045945 20047607 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1959 234 277 C3H Transcription Factor Family AT1G68200 47.917 4.24e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja4g1959 zf-CCCH 7.8e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1959 - - aprc:113846184 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1959 4 20045945 20047607 Lja4g1959 4 20045945 20047607 ECH