Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1956 ATGGCGTTTTTCATGCGGAGGGTTGCGAAGGCCACTCCGATCGCCTTCAGATTCAGCGCCGGCGGCGGCCAATCCAACAACAACAACTCCTCCTCTTTCCGGCTACCCTTCACGGCGATTGCTGCCATTTCCGGCGCCGCCTCCCTCTTTTACTGCTCTTCCTCTCCCTACTTGGTTCACTCTGAACAAATTGCAGAAGAGGAAACTAAAAGAGATATTGCGCTTAATCCTGATAAGTGGCTTGAATTTAAGTTGCAAGATACTGCTAGGGTTAGTCACAATACTCAGTTGTTCAGGTTTTCGTTTGATCCCACTAAGAAGTTGGGTTTGGATATTGCTTCTTGCCTTCTTACCAGGGCTCCATTGGGACAAGATGCAGAAGGAAAACCAAAATATGTCGTACGCCCGTATACCCCTATATCGGATCCAGAATCCAAGGGATATTTTGATTTGTTAATCAAGGTGTATCCTGAAGGAAAAATGAGCCAACATTTTGCCAGCTTAAAACCAGGTGATGTGGTTGAAGTGAAAGGGCCTGTTGAAAAGCTCAGATATACTCCTAATATGAAGAAGCATATTGGAATGATTGCTGGCGGGTCAGGAATTACTCCTATGCTTCAGATAATTGAGGCTATATTGAAGAATCCTGATGACAACACCAAGATATCATTGCTTTACGCCAATGTCTCCCCAGATGACATTCTGCTTAAACAGAAGCTTGACGTTCTAGCTACAAGCCACCCAAACTTAAAGGTATACTACACTGTAGATAATCCAACAAAAAATTGGAGAGGAGGTGCAGGTTACATATCAAAGGATGTGGTTGTGAAAGGCTTACCTGAGCCTAGTGATGATACTCTTATACTTGTGTGTGGTCCCCCTGGGATGATGAAACATATATCTGGTGAAAAGGCCAAGGACTGGACACAGGGAGAGGTTTCTGGCATACTCAAAGAGGCTGGATATACTGAACAAATGGTCTACAAATTTTGA 993 0.4421 MAFFMRRVAKATPIAFRFSAGGGQSNNNNSSSFRLPFTAIAAISGAASLFYCSSSPYLVHSEQIAEEETKRDIALNPDKWLEFKLQDTARVSHNTQLFRFSFDPTKKLGLDIASCLLTRAPLGQDAEGKPKYVVRPYTPISDPESKGYFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPVEKLRYTPNMKKHIGMIAGGSGITPMLQIIEAILKNPDDNTKISLLYANVSPDDILLKQKLDVLATSHPNLKVYYTVDNPTKNWRGGAGYISKDVVVKGLPEPSDDTLILVCGPPGMMKHISGEKAKDWTQGEVSGILKEAGYTEQMVYKF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1956 330 SUPERFAMILY Riboflavin synthase domain-like 71 188 IPR017938 -
Lja4g1956 330 Gene3D - 177 330 IPR039261 -
Lja4g1956 330 PRINTS Cytochrome B5 reductase signature 135 142 - -
Lja4g1956 330 PRINTS Cytochrome B5 reductase signature 232 243 - -
Lja4g1956 330 PRINTS Cytochrome B5 reductase signature 194 213 - -
Lja4g1956 330 PRINTS Cytochrome B5 reductase signature 171 185 - -
Lja4g1956 330 PRINTS Cytochrome B5 reductase signature 287 295 - -
Lja4g1956 330 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 194 213 IPR001709 GO:0016491
Lja4g1956 330 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 232 243 IPR001709 GO:0016491
Lja4g1956 330 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 135 142 IPR001709 GO:0016491
Lja4g1956 330 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 287 295 IPR001709 GO:0016491
Lja4g1956 330 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 172 328 IPR039261 -
Lja4g1956 330 CDD cyt_b5_reduct_like 83 330 - -
Lja4g1956 330 PANTHER NADH-CYTOCHROME B5 REDUCTASE 28 330 IPR001834 GO:0016491
Lja4g1956 330 Pfam Oxidoreductase FAD-binding domain 83 185 IPR008333 -
Lja4g1956 330 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 78 186 IPR017927 GO:0016491
Lja4g1956 330 PANTHER NADH-CYTOCHROME B5 REDUCTASE-LIKE 28 330 - -
Lja4g1956 330 Gene3D Translation factors 73 176 - -
Lja4g1956 330 Pfam Oxidoreductase NAD-binding domain 195 301 IPR001433 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1956 Lja-Chr4 20006885 20013178 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1956 70 330 NADPH P450 reductases AT5G17770 40.684 1.25e-65 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1956 K00326 - gmx:100781191 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1956 4 20006885 20013178 Lja4g1956 4 20006885 20013178 ECH