Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1955 ATGGATGAAGATTTGCTCAAACGCAACACCGATTGCGTCTATTTCTTGGCTTCACCCCTCACTTGCAAGAAGGGGGCTGAATGTGAGTATCGGCATAACGAGGTTGCGAGGCTTAACCCGAGAGATTGCTGGTACTGGTTATCTGGAAGCTGCCTTAACCCAACTTGTGCTTTTAGACACCCTCCATTGGATGGGCATACTGGAGGGCCATCTGAACCCGCAAAATCTTCATTGCCTCCATACAAAACAATGGTTCCCTGTTATTATTTCTACAATGGATTTTGCAACAAAGGTGACAGATGCTCATTTTTGCACGGGCCCGATGATAGCTTTCTTAGTGCAAAGCCTGTGAAGAATGACAATGGCAGCACTACTAGTACACTCAAACTAGAAAATAAAACTTCATCAGGAAATAAAACAGGTGTAGCATCAACACCAAGTGAAACACATGTTGACCAATCTTTAACTGCCTCAAAAGCTTCTTCTGATTTTAAACTTCAGCCTAAGGAAGATCCTCAGCTACCATTACCCGAAAATGTAGGACAAAAAGGTGATTGCCTGGAGCTATCTGCTTTAGACTGCAAAGCAGCTTCAGTGACTGGTTCAGACTCTCTGCTTCCAGATGATGGCTTTGTTCGTAAAACATCTGATTTACACACTGAAGAGAGTTCAGAGGAACAAGTGAATAGTCACATAGAGCCTGAGGAGCGGTGGGAATCGTCCCCTGGATTTGATGTTCTTGTTCAGGATGAATCAGAGATCTTGGGTTATGAGGATGATTCTGAATATTTACCAGTGCTTGATATGGATGACCAGGGACTGAATGAGCAATACTCAGGGTATGAATTTAAAGATCCAGCTGAGTATGATACTATGTGCCCGGACGATGATATTCTGTATGAACAAGGAACAAATGATGTTTACAGATGCTTCGATAGAGATTTTATGTATGCTAATGGTGGAAAAAACCATGCTTACACCAGAGAGATAATCTTGGATTCCATATTTTCCAGGAAAAGGATTCATATTTCGGATGAGATGGCTGCTTGTGACAAGAGCTTAGATCTGCGTGATCATCTGAGGGGACGTAGGGAGATTAATGGTCCTCCTGGTACAGATTTCTTAAGAAGGGATGAATCACCTTTGATGTTTCAAAACCAGGAAAGGCATCAAAGGCGTAGCATTCATCAGCGGCTAAGTAGAAGGTTGACATCAGAATTGGGATTTAGCACTATAGACTCGACTGGACAGGTTGAAGCTCTTTCAATTGCTAACAAGCATGGGGCATTTAGGCATTCCCAGCAACATAGGCCAAGAAAGCACTATAGAGAAAAGCAGCAGTTTCCTTCATCTAAAGTATCCAAGAAACCAGCTTCAAAGCGAAGGAGATTTGTTCAGGAATCCACTGCATTTTCAGGACCTAAGACTCTTGCAGAAATTAAAGAAGAGAAGATGAAGAAGGCTGAAGGAAGTTTGCATTGTGAAAGCACATCATCTGGTTTTGAGAATCCAGAACCTCTGAGTGAAATTGTCAAGGGCAAAAGGACCACGGGTTGA 1557 0.4265 MDEDLLKRNTDCVYFLASPLTCKKGAECEYRHNEVARLNPRDCWYWLSGSCLNPTCAFRHPPLDGHTGGPSEPAKSSLPPYKTMVPCYYFYNGFCNKGDRCSFLHGPDDSFLSAKPVKNDNGSTTSTLKLENKTSSGNKTGVASTPSETHVDQSLTASKASSDFKLQPKEDPQLPLPENVGQKGDCLELSALDCKAASVTGSDSLLPDDGFVRKTSDLHTEESSEEQVNSHIEPEERWESSPGFDVLVQDESEILGYEDDSEYLPVLDMDDQGLNEQYSGYEFKDPAEYDTMCPDDDILYEQGTNDVYRCFDRDFMYANGGKNHAYTREIILDSIFSRKRIHISDEMAACDKSLDLRDHLRGRREINGPPGTDFLRRDESPLMFQNQERHQRRSIHQRLSRRLTSELGFSTIDSTGQVEALSIANKHGAFRHSQQHRPRKHYREKQQFPSSKVSKKPASKRRRFVQESTAFSGPKTLAEIKEEKMKKAEGSLHCESTSSGFENPEPLSEIVKGKRTTG* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1955 518 Pfam Zinc-finger containing family 7 63 IPR041686 -
Lja4g1955 518 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 515 - -
Lja4g1955 518 MobiDBLite consensus disorder prediction 429 518 - -
Lja4g1955 518 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Lja4g1955 518 MobiDBLite consensus disorder prediction 114 181 - -
Lja4g1955 518 Gene3D - 3 63 - -
Lja4g1955 518 Gene3D - 75 144 - -
Lja4g1955 518 MobiDBLite consensus disorder prediction 477 491 - -
Lja4g1955 518 MobiDBLite consensus disorder prediction 217 239 - -
Lja4g1955 518 MobiDBLite consensus disorder prediction 116 163 - -
Lja4g1955 518 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Lja4g1955 518 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Lja4g1955 518 SMART c3hfinal6 82 107 IPR000571 GO:0046872
Lja4g1955 518 SUPERFAMILY CCCH zinc finger 82 106 IPR036855 GO:0046872
Lja4g1955 518 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 515 - -
Lja4g1955 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 107 IPR000571 GO:0046872
Lja4g1955 518 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Lja4g1955 518 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1955 Lja-Chr4 20002463 20005844 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja4g1955 zf-CCCH_3 2.3e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1955 - - aprc:113847503 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1955 4 20002463 20005844 Lja4g1955 4 20002463 20005844 ECH