Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1948 ATGGCATGGCCTGATCCTTCTTCCACCCCCTTCACTCGCAAACCAACTCGTCCCCCTTACATTCCTCCTCACCGCGCCAACGACGCCGTTTTCCCTCCTCCTCCTCCGAACACCGATCCTTCCTCCTTCCATTTCTCCAACCCCAACCACTACGCCTCCCCCCGCCCCCGCGGCCGTGGCCGCGGCGGCCACTTCAATGGTCGCCAGTTCCCCCGTTCCGATGACCACCCTCCTCGCCACCATCACAACCCACCACCACCACAACAACGGTTCCCGGTCGAAGTGGACAACAACATCAACAGCAACAGCAACCCCGCCGGCGACGTCGCGAATTTCGATGCGTACGAATCGGTCCCCGTCGAGGCCAGCGGCGAGAATGTGCCTTCTCCGGTTGGTTCGTTCGCGGAAACTGAACTCGATGAGGATTTGAAGAGGAATATCGAGCGATGCAAGTACGTGAAGCCCACGCCGGTTCAGCGTCACGCTATACCCATTGTCGCCGCCGGACGCGACCTCATGGCCTGCGCGCAAACCGGGTCTGGTAAAACGGCAGCGTTTTGCTTCCCCATTATATCTGGGGTTTTGAAGGCTCGTTCTGGTTCTGGTTCTGGTTCTGGGTTTTCTTCCATTCCTCGTTCTGATGCCTTCGTTGCATACCCAACTGCTCTCATTCTATCTCCTACTAGGGAGTTATCTTGTCAGATACATGCTGAAGCAACCAAGTTTGCTCATCAAACTGGAGTGAAGATTGTGGTTGCTTATGGGGGTGCTTCCATTGTTAAGCAGCTTCAAAATTTGGAGAAAGGTGTTGATATCTTGGTTGCTACACCTGGACGCTTGGTGGATATTATTGAGAGAGAAAGGGTTTCATTATCGAAGATTAAGTACCTTGCTTTGGATGAAGCTGATCGCATGTTGGACATGGGTTTTGAGCAGCAAATACGCAAGATTGTGCAGCAGATGCACATGCCTCCTCCAGGTGTTAGACAAACAATGCTTTTCAGTGCTACATTCCCCACTGATATACAGAAGCTGGCTGCGGATTTTCTGTCAAACTACATATTCCTGGCTGTTGGAAGGGTTGGTTCGAGCACTGAACTTATTGTACAAAAAATTGAACTTGTACAAGATACAGACAAACGAAACCATCTTGCTAACCTTCTGTGTCGTCAAAGGGCAAATGTAGACCATGGGAAGCAAGCCCTAACTCTTATCTTTGTTGAAACAAAGAAAGGAGCTGATGCTTTAGAAATTTGGTTGTCCAGAAATGGGTTTCCAGCTATTGCAATACATGGTGATAAAGTTCAAATGGAGCGGGAGCGAGCTTTAAGATCTTTCAAACGTGGTTTCACTCCCATTTTGGTAGCAACTGATGTTGCTTCCCGGGGTTTAGATATACCACATGTGGCTCATGTTATCAACTATGATTTGCCTAGAGACATAGCTGACTATGTACATAGGATTGGTAGAACAGGCCGTGCTGGTAAATCTGGACTAGCCACTGCTTTTTTCAGCAGCAACAAGAACCCTCCTATTGCAAAGGCTCTTGTTGAAATTTTGCAGGAAGCAAAGCAGGAAGTTCCGGCTTGGCTCGGTCAATTTGCCGAGGGCTCATCATCTGGTGATCGTGATCATGGACCTCCGAGGCGAGGCAGAGGCAATTTCGGTGGTCGTGATTTCCGTAATGTCACTCAACCTGCTGTGGAGAATTACAACAACTACTATAATACTTATGGCAATGCTGACCATTATGTGGAGCCTTATGTCACTCAGCCTGATACAGTTTATGCGAGCAATAATCATTATGATACCTCTTATGACTACAACAACACAAACATCCCTAATTCTGTTTATGCAAGCAGTAATCATCATTATACTGATCCTAATGCTGAGTTTTGTGGAGCTGGGAGGGTTGAAAATGGGCCTTGGGGTCATGCATCTGTTGTTGCTACTGGATGGGACTAG 1965 0.486 MAWPDPSSTPFTRKPTRPPYIPPHRANDAVFPPPPPNTDPSSFHFSNPNHYASPRPRGRGRGGHFNGRQFPRSDDHPPRHHHNPPPPQQRFPVEVDNNINSNSNPAGDVANFDAYESVPVEASGENVPSPVGSFAETELDEDLKRNIERCKYVKPTPVQRHAIPIVAAGRDLMACAQTGSGKTAAFCFPIISGVLKARSGSGSGSGFSSIPRSDAFVAYPTALILSPTRELSCQIHAEATKFAHQTGVKIVVAYGGASIVKQLQNLEKGVDILVATPGRLVDIIERERVSLSKIKYLALDEADRMLDMGFEQQIRKIVQQMHMPPPGVRQTMLFSATFPTDIQKLAADFLSNYIFLAVGRVGSSTELIVQKIELVQDTDKRNHLANLLCRQRANVDHGKQALTLIFVETKKGADALEIWLSRNGFPAIAIHGDKVQMERERALRSFKRGFTPILVATDVASRGLDIPHVAHVINYDLPRDIADYVHRIGRTGRAGKSGLATAFFSSNKNPPIAKALVEILQEAKQEVPAWLGQFAEGSSSGDRDHGPPRRGRGNFGGRDFRNVTQPAVENYNNYYNTYGNADHYVEPYVTQPDTVYASNNHYDTSYDYNNTNIPNSVYASSNHHYTDPNAEFCGAGRVENGPWGHASVVATGWD* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1948 654 Pfam Helicase conserved C-terminal domain 380 495 IPR001650 -
Lja4g1948 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 507 IPR027417 -
Lja4g1948 654 MobiDBLite consensus disorder prediction 11 41 - -
Lja4g1948 654 MobiDBLite consensus disorder prediction 534 560 - -
Lja4g1948 654 Gene3D - 92 358 IPR027417 -
Lja4g1948 654 MobiDBLite consensus disorder prediction 542 556 - -
Lja4g1948 654 MobiDBLite consensus disorder prediction 93 108 - -
Lja4g1948 654 CDD SF2_C_DEAD 368 504 - -
Lja4g1948 654 MobiDBLite consensus disorder prediction 68 82 - -
Lja4g1948 654 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 45 574 - -
Lja4g1948 654 SMART helicmild6 414 495 IPR001650 -
Lja4g1948 654 Pfam DEAD/DEAH box helicase 156 345 IPR011545 GO:0003676|GO:0005524
Lja4g1948 654 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 535 IPR001650 -
Lja4g1948 654 MobiDBLite consensus disorder prediction 1 110 - -
Lja4g1948 654 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 574 - -
Lja4g1948 654 CDD DEADc_DDX3_DDX4 133 362 IPR044763 GO:0003724|GO:0005524
Lja4g1948 654 Gene3D - 359 538 IPR027417 -
Lja4g1948 654 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 132 160 IPR014014 GO:0003724
Lja4g1948 654 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 356 IPR014001 -
Lja4g1948 654 SMART ultradead3 151 371 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1948 Lja-Chr4 19951350 19954335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1948 92 513 Eukaryotic Initiation Factors Gene Family AT1G72730 31.678 2.06e-56 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1948 K11594 - gmx:100791226 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1948 4 19951350 19954335 Lja4g1948 4 19951350 19954335 ECH