Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1936 ATGGCTTCGACCCCTGTTCTGTTCTTACTGTTGTTAACGCTCTTCACAACAGAAGCCACAGCTGAAAGAAGAACCTCTACCAATAGCACAATCCATCTTATCAATAGAACCATCCCTCTGTGGTCTTCGCTCTCTCCTGAAGGAAAACAAAATTCATGGGCATCAAGTTCCGGCCGGTTTGCTTTTGGCTTTTACCCCAAAGGTAATGGTTTTGCAGTTGGAATATGGCTGTTTAGTTCACCTAACATCACTGTTGTCTGGACTGCTTTTCGCGATACTCCACCCTTCTCCTCTAACTCCTCACTGAGTTTGACTGATAGTGGCCTGGTTCTTCGAACTGGGGAGCAACAGCAGCTTCAAATTGCAAGTCCAGATCCGAATAATCCATATTACGAAGGGAATCAATTTCAACTTACAGTTGCAGTAGCTTCTGCTTCAATGCTTGATTCTGGCAACTTTGTGATCTATGATAAGAACTTACATAGTTTTGATCACCCAACTGATACTATGCTGGGGGGTCAATCTCTGTCTTTTGGAGGACATCTGTTCTCTAGTTCATCAGGGACTAACCCCTCAACTGGAAGATTTTGTCTCGATATGCAGGGTGATGGAAATCTTGTTCTGTATCCAACAAACGCACCAATGGATGTTTACTGGGCCTCTGGTACTAATACTGGTACGCATCATTTTTACATTAACAGCACAGGTTTACTGCAGATCAGGAATAACATTGGTTCGTACTCTAAAGATCTTTCCAAGCCTGATGGTTCGGCTAATGGGAGCAAGACCATTTATCGTGCAACCCTCGATTTTGATGGGGTTTTACGGCTGTATGCTCATGTTAACAATGACCATGGCAAAACAATAGCATGGAAGCCAGATGGAGGTACATGTGAAGTAAGTGATTTTTGTGGCTTCAACAGCTACTGCACATTCAATGGCCGCGACCAACCAGTTTGCAATTGTCTTGAGGGTTTTGAATTCAAAGATGCAAATGAAGAGACTCTTGGCTGCAAAAGGAACTCATCAAAAGCTGAGTGTACAAGTGACAAAGACAGTTCATCCCATTATAACATGGCCTTGATGAACAATATTGAATGGGCGGATCGTCCTTATTTCGAGTCTGATATGTCACATGAAGAAGAATGCTCCTCTGCTTGTTTGGCTGATTGCAACTGTTGGGCTGCACTGTATCAGAAAAATAGATGCAAGAAACATGGGCTGCCTTTGAGATATGTCAAAAGGAGAGGGCTAGCTGAATCTGACCCACCCACGGTATTCTTAAAAGTGGGACACAACAGCCTCAAAATCCAAAAACCTATACCACCACCACCACCTCCAATCAAGAGTACAAGTAACAAAGCAGTGGTTCATATTATTATTGTTATATCTGTATTTACTTTGTTTTTATGTTCAATGATTGCAATCTCCAGCCATTACATGTACAAGATTCGAGTATTAACCTACAAAAGGCTCTCAGAGACTTGGAACTTGGGTCTGAATGAAGAGGTGGCTCTGAGAAGGTTTTCATACAATGAGCTTAAAAGAGCAACAAATCATTTCAGGAAAGAGTTGGGTAAGGGCGCTTTTGGAGCAGTTTACAAGGGGGCCTTGTCCAAAGGTAGGAGACTGATTGCGGTGAAGAGGCTAGAGAAGTTAGTGGAAGAAGGAGAAAGGGAGTTTCAAGCAGAGGTGCGGGCCATCGGAAAAACCCACCACAGGAACCTGGTTCGGTTGCTGGGATTTTGTGCTGAAGGTTCCAAAAGGCTTCTGGTTTATGAATACATGAGCAAAGGTTCCCTTGGGCAGCTTATCTTTGGTGATCTACGGCGTCCAGATTGGGAGGAGAGAGTAAGAATAGCACTGAACATTGCAAGAGGGATCCTCTATCTCCATGAAGGATGTGAGGCACCAATCATTCATTGTGACCTCAAGCCTGAAAACATTTTGATGGATGAGTTTTGGACTGCCAAGATATCTGATTTTGGGCTTGCAAAACTTCTAATGCCAGATCAAACCAGAACCTTCACAGGGGCTAGAGGGACAAGAGGGTACATGGCCCCAGAATGGAACAAGAACACCCCAATATCAGTTAAGGCAGATGTTTATAGCTATGGAATTGTGCTGTTGGAAACTTTATGCTGCAGAAGAAACATCAAAGTTAATTGCTTCGTGGCCAAGGAGTTAAATAAGCTTGTTCCTTCAGAAGTCATAGATGAAAATGTCCTGGAAAATATGATTAAGGTGGCACTTTGGTGTATCCAAGATGAACCTGTTCTCCGGCCAGCAATGAAGAGTGTGGTGTTGATGTTAGAAGGGGTTACCGACATAGCAATTCCTCCTTGTCCAAATTCAAATCGTACCTCTAGCAATAGCACCATACATCTGGGGTCTTCACTCTCTCCTAAAGGAAAACACACTTCATGGCCATCAAGTTCTGGCCGGTTTGCTTTTGGGTTTTACCCCAAAGGAAATGGCTTTGCAGTTGGAATATGGCTGGTCAGTTCACCTGAAAACACTGTTGTGTGGACTGCTGATCGTGATAGTCCACCACTCTCCTCTAACTCTTCACTGAATTTGACCGAGCAAGGCCTGCTTCTTCGAACTGGAGATCAGTTAGACCAACGTCTCATTCCATATTTGAATTATACATTAGCTTTGGCATCTATGCGTGATTCTGGCAACTTTGTGCTATTTGATAAGCAGTCTGATGCTATCTGGGAAAGCTTTGACTACCCAACTGACACCATATTAGGAGGTCAGAACTTCACTTCAATCAATTTACTGATCTCTAGTATGTCCGAAACAGACCATTCAAGAGGGCGTTTCTATCTCGATTTCAACCCGGGATCTGATAGACAGCTCGTTGCTTACCCTTTCAATAGCTCACGAGAGGATGAGGATCATTATTGGCTCAGTCTTAATGTTGAAGGTGTTCTTTGCTTAGAAGGCCATGTCGTTAAAAAATGCTTAAATGATAAGCCTAGAAGCAAGTCAGAGAACACAACTTCAATCTACCGTGCAACACTGGATGTAGATGGGAACTTGAGATTGTATGAGCACCGATTTGAAGGCAATAGTACAAGCTTACATGAGGAAAGTACGGTGTGGCAAGCATTGAATGATACATGTGAAGTCGAGGGGTTCTGTGGGTTGAACAGTTATTGCTCGAGCATGAATGGTAAAGCTGTGTGTTACTGTTACCCGGGTTTTGTCCCTTTCAATAGCAGCCGAAACATGCCTCTAGACTGCACACAAATTCATATCAAAGATGATTGTGAAAGAAGTGGAAACCCAATGGTGTGGTATGATGTTATTCACTGGGAGAATATTACTTGGGGTGATACTCCATATTCAGCTATATCAATGAAGAAGGAAGCTTGTGAGAAGTCTTGCCACGGAGATTGTGATTGTTGGGGAGCATTGTATTCCAGTGGCCACTGCAATAAATATAACCTTCCCCTTATCTATGGCAGAAGGGTTCATGATAAATCAAAAGTGGCACTTTTAAAGGTGCCTTCAAGATATGCCATGAAGCCAGCTCCAACTTCAAACACCACCTACATGCACATGCCTAGTGTCATTTTTGATAACAAGAGAAGTCTGATATTGACTCTTTCCCTTACTCTGGGTTGCATTTCATTGTTGTGTTTGGTCTTTGCAGTGTCCACTTTCTACATTTACCGGCGTCGAGTTTATAGGTATACAATGTTGTCTGCAAATGAAGATTTGCGATTTAGTGAAGAGTGTTCTTTGCGTTCATTTTCTTATGATGAACTTGTGAAATCAACTAGAGGCTTCACAGAAGAGATAGGCAGAGGATCATTTGGAGCTGTTTATAAAGGCATGATGGGTGGAAGTAGTAACAGAAGGATTGCGGTCAAGAGACTGGAGAGAGTTGCTGATGAAGGGGAGAGGGAATTCCGAGCTGAAATTACTGCCATAGCTCGAACACATCATAGGAATTTGGTTAAGCTAGTTGGTTTTTGTATAGAAGGATCTAACAAGCTGCTTGTTTACGAATATGTCAGCAACGGGTCTCTTGCAAATCTGCTCTTCAATTCTAAGATGCGGGGGATATCATGGAAAGAGAGAATAAAAATCGCATTGGATGTGGCCAGAGGAGTCCTGTATCTACATGAAGAGTGTGAAGTCCGCATTATCCATTGCAATATAAACCCTCGAAATATACTCATGGATGAAGCATGGACTGCAAAGATCTCTGATTTTGGATTGGCAAGGCTATTAAAGCCGGATTATTCAAGAACTAAAAAAGGGGATGAAGGGACAAGCAGGTACTTGGCACCTGAATGGCACAAGGATGCATCTGTATCCGTAAAAGTTGACATTTACAGTTTTGGCATGGTAGTATTGGAGATTATATGCCGCAGAAGCAGTATAGAGATGCACGTTTCCTCAACTGAGGAAATACTTCTTTCCAGGTGGGTATATCAATGCTTTGCAGCTGGGCAGTTGAATATGCTTGTTACACATGACGAAGATGTAGATTGGAAGATAATGGAAATAATGGTGAAGGTGGGGTTGTTGTGTGTGCAAGATAACCCATCTCTTCGTCCTTCAATGAAGAACGTCATCTTGATGTTGGAAGGATTGAAAGATATTCCAATTCCTCCATCTCCGGTCCAGTTGGTTGAGTAG 4659 0.4276 MASTPVLFLLLLTLFTTEATAERRTSTNSTIHLINRTIPLWSSLSPEGKQNSWASSSGRFAFGFYPKGNGFAVGIWLFSSPNITVVWTAFRDTPPFSSNSSLSLTDSGLVLRTGEQQQLQIASPDPNNPYYEGNQFQLTVAVASASMLDSGNFVIYDKNLHSFDHPTDTMLGGQSLSFGGHLFSSSSGTNPSTGRFCLDMQGDGNLVLYPTNAPMDVYWASGTNTGTHHFYINSTGLLQIRNNIGSYSKDLSKPDGSANGSKTIYRATLDFDGVLRLYAHVNNDHGKTIAWKPDGGTCEVSDFCGFNSYCTFNGRDQPVCNCLEGFEFKDANEETLGCKRNSSKAECTSDKDSSSHYNMALMNNIEWADRPYFESDMSHEEECSSACLADCNCWAALYQKNRCKKHGLPLRYVKRRGLAESDPPTVFLKVGHNSLKIQKPIPPPPPPIKSTSNKAVVHIIIVISVFTLFLCSMIAISSHYMYKIRVLTYKRLSETWNLGLNEEVALRRFSYNELKRATNHFRKELGKGAFGAVYKGALSKGRRLIAVKRLEKLVEEGEREFQAEVRAIGKTHHRNLVRLLGFCAEGSKRLLVYEYMSKGSLGQLIFGDLRRPDWEERVRIALNIARGILYLHEGCEAPIIHCDLKPENILMDEFWTAKISDFGLAKLLMPDQTRTFTGARGTRGYMAPEWNKNTPISVKADVYSYGIVLLETLCCRRNIKVNCFVAKELNKLVPSEVIDENVLENMIKVALWCIQDEPVLRPAMKSVVLMLEGVTDIAIPPCPNSNRTSSNSTIHLGSSLSPKGKHTSWPSSSGRFAFGFYPKGNGFAVGIWLVSSPENTVVWTADRDSPPLSSNSSLNLTEQGLLLRTGDQLDQRLIPYLNYTLALASMRDSGNFVLFDKQSDAIWESFDYPTDTILGGQNFTSINLLISSMSETDHSRGRFYLDFNPGSDRQLVAYPFNSSREDEDHYWLSLNVEGVLCLEGHVVKKCLNDKPRSKSENTTSIYRATLDVDGNLRLYEHRFEGNSTSLHEESTVWQALNDTCEVEGFCGLNSYCSSMNGKAVCYCYPGFVPFNSSRNMPLDCTQIHIKDDCERSGNPMVWYDVIHWENITWGDTPYSAISMKKEACEKSCHGDCDCWGALYSSGHCNKYNLPLIYGRRVHDKSKVALLKVPSRYAMKPAPTSNTTYMHMPSVIFDNKRSLILTLSLTLGCISLLCLVFAVSTFYIYRRRVYRYTMLSANEDLRFSEECSLRSFSYDELVKSTRGFTEEIGRGSFGAVYKGMMGGSSNRRIAVKRLERVADEGEREFRAEITAIARTHHRNLVKLVGFCIEGSNKLLVYEYVSNGSLANLLFNSKMRGISWKERIKIALDVARGVLYLHEECEVRIIHCNINPRNILMDEAWTAKISDFGLARLLKPDYSRTKKGDEGTSRYLAPEWHKDASVSVKVDIYSFGMVVLEIICRRSSIEMHVSSTEEILLSRWVYQCFAAGQLNMLVTHDEDVDWKIMEIMVKVGLLCVQDNPSLRPSMKNVILMLEGLKDIPIPPSPVQLVE* 1553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1936 1552 Pfam S-locus glycoprotein domain 1001 1073 IPR000858 GO:0048544
Lja4g1936 1552 Pfam S-locus glycoprotein domain 259 328 IPR000858 GO:0048544
Lja4g1936 1552 ProSitePatterns Protein kinases ATP-binding region signature. 525 548 IPR017441 GO:0005524
Lja4g1936 1552 ProSiteProfiles Bulb-type lectin domain profile. 37 168 IPR001480 -
Lja4g1936 1552 SMART blect_4 791 913 IPR001480 -
Lja4g1936 1552 SMART blect_4 167 297 IPR001480 -
Lja4g1936 1552 SMART blect_4 44 166 IPR001480 -
Lja4g1936 1552 Gene3D Transferase(Phosphotransferase) domain 1 596 779 - -
Lja4g1936 1552 ProSiteProfiles Protein kinase domain profile. 519 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1936 1552 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 789 1550 - -
Lja4g1936 1552 SUPERFAMILY Protein kinase-like (PK-like) 1247 1536 IPR011009 -
Lja4g1936 1552 ProSiteProfiles Bulb-type lectin domain profile. 785 911 IPR001480 -
Lja4g1936 1552 SUPERFAMILY alpha-D-mannose-specific plant lectins 84 226 IPR036426 -
Lja4g1936 1552 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 789 1550 - -
Lja4g1936 1552 ProSiteProfiles Protein kinase domain profile. 1265 1538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1936 1552 Pfam Protein kinase domain 522 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1936 1552 Gene3D - 161 254 IPR036426 -
Lja4g1936 1552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Lja4g1936 1552 SMART serkin_6 519 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1936 1552 SMART serkin_6 1265 1535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1936 1552 SUPERFAMILY alpha-D-mannose-specific plant lectins 189 282 IPR036426 -
Lja4g1936 1552 CDD STKc_IRAK 1271 1538 - -
Lja4g1936 1552 Gene3D Transferase(Phosphotransferase) domain 1 1343 1541 - -
Lja4g1936 1552 Pfam D-mannose binding lectin 840 923 IPR001480 -
Lja4g1936 1552 Pfam D-mannose binding lectin 84 177 IPR001480 -
Lja4g1936 1552 Coils Coil 547 567 - -
Lja4g1936 1552 ProSitePatterns Protein kinases ATP-binding region signature. 1271 1295 IPR017441 GO:0005524
Lja4g1936 1552 Pfam Protein tyrosine and serine/threonine kinase 1267 1533 IPR001245 GO:0004672|GO:0006468
Lja4g1936 1552 SUPERFAMILY alpha-D-mannose-specific plant lectins 827 1021 IPR036426 -
Lja4g1936 1552 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 1 787 - -
Lja4g1936 1552 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 787 - -
Lja4g1936 1552 Gene3D - 35 160 IPR036426 -
Lja4g1936 1552 Gene3D Phosphorylase Kinase; domain 1 1231 1342 - -
Lja4g1936 1552 Gene3D Phosphorylase Kinase; domain 1 486 595 - -
Lja4g1936 1552 Gene3D - 786 1041 IPR036426 -
Lja4g1936 1552 SUPERFAMILY Protein kinase-like (PK-like) 503 772 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1936 Lja-Chr4 19800204 19833234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1936 463 781 Receptor kinase-like Gene Family AT5G20050 38.781 1.06e-63 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Lja4g1936 PK_Tyr_Ser-Thr 9.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1936 - - cam:101496142 978.393