Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1934 ATGGTTCATTCAAAGAAGTTCAGAGGTGTCAGACAGCGCCATTGGGGTTCATGGGTATCAGAAATTCGACACCCCCTTTTGAAGAGAAGGGTGTGGCTAGGCACATTTGAAACAGCAGAGGAAGCAGCACGAGCATATGATCAAGCTGCAATTCTGATGAGTGGGCGAAATGCCAAAACCAATTTCCCAATTACTCAGACTCCAGAAGGTGATCCGAAGAGCATTACCAGTGAGGAAACCCCCTCATCCACTTCCAAAGATCTGGAAGAAATTTTACATGCCAAGCTTCGAAAATGCAGCAAGGCACCTTCCCCTTCCATGACATGTTTGAGGCTCGACACCGAGAACTCCCACATCGGAGTGTGGCAGAAGCGTGCAGGGCGGCGCTCTGATTCGAATTGGGTCATGACGGTTCAGCTCGGAAAAACCGTCACCAATAATGGTGACGGTCTTCCTCTACCTTCTCCTGATCAATCTCTGATCTCACCAGCCCTAACACGAAATGAGGAACTGTTGAGGCCAGAGATTGATGAGGAGGAGAGAATGGCACTGCAAATGATAGAGGAGCTTCTCAATAACAGGAACTGTCCTAGCCCATCATCATTCAACACCACACAACAACAACAAGGGGATCATGATCATGATGACAGCTTTTTTCTTTGA 663 0.4781 MVHSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSITSEETPSSTSKDLEEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGKTVTNNGDGLPLPSPDQSLISPALTRNEELLRPEIDEEERMALQMIEELLNNRNCPSPSSFNTTQQQQGDHDHDDSFFL* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1934 220 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lja4g1934 220 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lja4g1934 220 MobiDBLite consensus disorder prediction 194 208 - -
Lja4g1934 220 MobiDBLite consensus disorder prediction 194 220 - -
Lja4g1934 220 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Lja4g1934 220 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lja4g1934 220 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lja4g1934 220 MobiDBLite consensus disorder prediction 61 86 - -
Lja4g1934 220 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lja4g1934 220 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Lja4g1934 220 MobiDBLite consensus disorder prediction 61 82 - -
Lja4g1934 220 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Lja4g1934 220 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 202 - -
Lja4g1934 220 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1934 Lja-Chr4 19757622 19758878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1934 1 192 AP2-EREBP Transcription Factor Family AT1G15360 61.463 1.17e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja4g1934 AP2 8.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1934 - - gmx:100814893 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1934 4 19757622 19758878 Lja1g3876 1 48888787 48890265 ECH
Lja4g1934 4 19757622 19758878 Lja4g1934 4 19757622 19758878 ECH