Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1926 ATGAAGAAGGTGAGGAGAAGGATCGGGAAATATGAAGTGGGTAGAACAATCGGTGAAGGTACATTCGCCAAGGTTAAATTCGCTAAAAATTCTGAGACTGGGGAAAGTGTTGCTATTAAAATCATGGATAAAACCACCATTCTCAAGCACAGAATGGTTGAACAGATTAAAAGAGAGATATCCATTATGAAGATTGTCAGACATCCTAATATAGTAAGGCTGCATGAGGTTTTGTCCAGCCAGACCAAGATCTACATAATCCTCGAGTTTGTAATGGGAGGAGAATTGTATGATAGAATTGTTCAGCGGGGAAAGCTTTCTGAAGATGAATCTAGGCGCTACTTTCAACAACTTATAGATGCTGTTGCTCATTGTCATAAAAAGGGTGTGTACCATAGAGACTTGAAGCCTGAAAACCTTCTCCTTGATGCTTTTGGAAATTTGAAGGTTTCTGACTTTGGATTGAGTGCATTGACTAAGCAGGGTGTTGACCTGCTTCACACCACATGTGGAACCCCAAGTTATGTTGCTCCTGAGGTGCTCAGTAATCAAGGTTATGATGGTGCAGCTGCTGATGTTTGGTCATGTGGAGTCATCCTATATGTTCTAAAGGCCGGATATCTTCCTTTTGAGGAGGCAGACCTTTCAACATTGTACCGAAGGACCAGTGCTGCTGAATTTGTTTGTCCATCCTGGTTTTCCACTGGCACTACGACATTGATACATAAAATTCTGGATCCTAATCCTAAAACACGGGTGAAAATAGGAGAAATAAGGAAAGATCCTTGGTTTCAAAGAAACTATTTGCCCCTCAAGCTCAATGAAGATGAACAAGTGAATTTGGATGATGTTCAGGCTGTGTTTGATGATATTGAGGACCAATATGTTCCTGTACAGTCAGAAATCACCGAGGGAGGTCCTTTGGTAATGAATGCATTTGAGATGATTACCTTATCACAAGGGTTGAATCTTTCACCATTATTTGACAGGCATCAGGATTATGTAAAGCGGCAAACTCGTTTCGTTTCCCGCAAACCAGCAAAAGTTATAATCTCATCTATTAAAGTTGTTGCAGAGTCAATGGGTCTAAAACTCCAGAGTCGCAATTACAAGATGAGGATTGAAGGACTTTCTGCGAATAAGGCTGGACAATTTGCAGTGGTCTTGGAGGTGTATGAAGTCGCACCGTGCCTTTACATGGTAGATGTTAGAAAGGCAGCTGGGGATACTCTTGACTATCACAAGTTTTACAAGAATCTTTGTGCCAAACTAGAAAATATCATTTGGAGGCCGACAGAGACTATGCCAGATTCTGGGTTGCTTCGACAAATGACCTTGTGA 1341 0.4131 MKKVRRRIGKYEVGRTIGEGTFAKVKFAKNSETGESVAIKIMDKTTILKHRMVEQIKREISIMKIVRHPNIVRLHEVLSSQTKIYIILEFVMGGELYDRIVQRGKLSEDESRRYFQQLIDAVAHCHKKGVYHRDLKPENLLLDAFGNLKVSDFGLSALTKQGVDLLHTTCGTPSYVAPEVLSNQGYDGAAADVWSCGVILYVLKAGYLPFEEADLSTLYRRTSAAEFVCPSWFSTGTTTLIHKILDPNPKTRVKIGEIRKDPWFQRNYLPLKLNEDEQVNLDDVQAVFDDIEDQYVPVQSEITEGGPLVMNAFEMITLSQGLNLSPLFDRHQDYVKRQTRFVSRKPAKVIISSIKVVAESMGLKLQSRNYKMRIEGLSANKAGQFAVVLEVYEVAPCLYMVDVRKAAGDTLDYHKFYKNLCAKLENIIWRPTETMPDSGLLRQMTL* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1926 446 Coils Coil 274 294 - -
Lja4g1926 446 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Lja4g1926 446 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1926 446 SUPERFAMILY Protein kinase-like (PK-like) 7 317 IPR011009 -
Lja4g1926 446 Gene3D Transferase(Phosphotransferase) domain 1 2 306 - -
Lja4g1926 446 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1926 446 PANTHER - 4 438 - -
Lja4g1926 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Lja4g1926 446 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 4 438 - -
Lja4g1926 446 Pfam NAF domain 307 365 IPR004041 GO:0007165
Lja4g1926 446 SMART serkin_6 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1926 446 Gene3D Kinase associated domain 1, KA1 307 430 - -
Lja4g1926 446 CDD CIPK_C 311 426 - -
Lja4g1926 446 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1926 Lja-Chr4 19561347 19571076 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1926 1 372 CBL-interacting serine-threonine protein kinases AT5G35410 72.043 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja4g1926 Pkinase 1.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1926 - - gmx:100811380 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1926 4 19561347 19571076 Lja4g1926 4 19561347 19571076 ECH