Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1923 ATGTCGACCTGTGGCATCATCGATGTTGCGCCTGCTTCTGAGCAATTGTGCTACATCCCTTGCAACTTCTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAGCCTGTTTGACATCGTGACAGTCCGATGCGGGCACTGCACTAATCTTTGGTCTGTCAACATGGCCGCTGCGTTTCAATCACTCTCATGGCAAAATCTTCAGGCTCCTGGCCACTGCAACCCAGAGTACAGAATTGACACGGGCTCCACTTCCAAATGCAACAATAGGCTTGCAATGCGTGCTCCCACCACTCATCATGTCACTGAGGAAAGGATTGTCAACCGCCCTCCCGAGAAGAGGCAGCGTGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAAATTCAGAGGATCAAGGCTAACAATCCTGATATCAGTCACCGAGAAGCGTTTAGCACAGCTGCAAAGAACTGGGCACATTTTCCTCATATTCATTTTGGGCTCATGCTGGAGAACAACAATCAAGCTAAGATGGACAATGTCTCTGAGAAGCATTTGATGTCAAGGGCTGCGCTGTTGAACAAATGA 573 0.4799 MSTCGIIDVAPASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQNLQAPGHCNPEYRIDTGSTSKCNNRLAMRAPTTHHVTEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLENNNQAKMDNVSEKHLMSRAALLNK* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1923 190 Gene3D High mobility group box domain 102 160 IPR036910 -
Lja4g1923 190 SUPERFAMILY HMG-box 107 156 IPR036910 -
Lja4g1923 190 Pfam YABBY protein 12 163 IPR006780 GO:0007275
Lja4g1923 190 PANTHER PROTEIN YABBY 6-RELATED 1 180 IPR006780 GO:0007275
Lja4g1923 190 PANTHER AXIAL REGULATOR YABBY 5 1 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1923 Lja-Chr4 19475064 19478905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1923 12 173 C2C2-YABBY Transcription Factor Family AT2G26580 78.395 3.01e-91 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lja4g1923 YABBY 1.7e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1923 K25796 - gmx:100499942 361.303