Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1906 ATGGAGCTCCAACTTGGTCTCTCTCTCTTAACCAATTCTCCTGATGCCAAAGACCTCTTCCCTTGTACTCACAATAACAAACGCACTTTCTCCCAAATTGTAGAAGATGCAGCAGAAAGCACCAACACAGACCCCGCCATGCTTCCTACTCTGTCTCTTCTCCCCTTCACTAGGATTAACAACGACAAGGAGGAGGATGAAGAAGATGCTCCGGTGGGTTGGCCGCCAGTAAATTATAGGAGGAAGAAGCTCCGTTCTTCTATCAACCAAAACGGTATGTACGTGAAGGTGAAGATGGAGGGTGTAGGAATCGCCAGAAAGGTTGATCTCACCATGCACCGTTCATTTCACTCGCTCAAGGATACCTTGATGGACATGTTTGGAACTCAATGTGATCAACAGTCAAAGAGCTATGAACTGGCTTATCAGGACAGGGAAGGTGATTGGCTTCTTGCTGAAGACGTGCCATGGAGAAATTTCATTCAGTGTGCACAGCGCCTCAAATTGCTTAAGACTAGAGTCTAG 525 0.4667 MELQLGLSLLTNSPDAKDLFPCTHNNKRTFSQIVEDAAESTNTDPAMLPTLSLLPFTRINNDKEEDEEDAPVGWPPVNYRRKKLRSSINQNGMYVKVKMEGVGIARKVDLTMHRSFHSLKDTLMDMFGTQCDQQSKSYELAYQDREGDWLLAEDVPWRNFIQCAQRLKLLKTRV* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1906 174 Pfam AUX/IAA family 22 131 IPR033389 -
Lja4g1906 174 Pfam AUX/IAA family 135 172 IPR033389 -
Lja4g1906 174 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 1 172 - -
Lja4g1906 174 SUPERFAMILY CAD & PB1 domains 85 171 - -
Lja4g1906 174 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 172 IPR003311 GO:0005634|GO:0006355
Lja4g1906 174 ProSiteProfiles PB1 domain profile. 92 174 IPR000270 GO:0005515
Lja4g1906 174 Gene3D - 86 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1906 Lja-Chr4 19114017 19114955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1906 94 172 B3 DNA Binding Superfamily AT5G20730 35.366 6.22e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja4g1906 AUX_IAA 1.1e-24 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1906 K14484 - gmx:100804096 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1906 4 19114017 19114955 Lja4g1906 4 19114017 19114955 ECH