Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1904 ATGAAACTTTTTAGCAACCATCCAGCCATGGAGATAGAGCAGAAGAAGAAGAAGTGCGGGTGCTGGAGTGTCCTCAAACGTGGCGTTAGAGGTGCGTGCAAACCCTCAGATTCCAGAGACTCTGCTAACACTATCCCTCGTACTAGTCTCGTTCATGATGCAGCAACTGAGACGCGGTACCTGAATGCTAGCAATCGAGAACTATTTCCTCCGAATGAAGCTCGACTATCTTCTGATAATCCTGATCCCGCTGCGGCTCAGGAGAACAAGGCTCCTTGCCAGCTCCTTCAATTTACATTTCAAGAACTAAAATCAGCAACTGGAAATTTCAGACCAGATAGCATTCTTGGGGAGGGTGGCTTTGGCTATGTTTTCAAAGGATGGATTGAGGAAGATGGAACTGCCCCGGCGAAACCCGGGTCAGGGGTTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGTCTTCAGGGTCACAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATCCTAACCTTGTGAAACTTATCGGCTACTGCATTGAAGATGATCAGCGGCTTCTTGTTTACGAGTTTATGACCCGTGGCAGTCTAGAAAATCATCTATTCAGAAGAACCGTACCTCTTCCCTGGTCCAACAGGGTTAAGATTTCACTTGGTGCAGCAAAAGGATTGGCTTTCCTCCATAATGGTCCAGAACCAGTCATCTACAGAGATTTCAAAACATCAAACATTTTGCTTGATACGGAGTATAATGCAAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGCCCTCAGGGGGACAAAACACATGTTTCTACTAGAGTTGTTGGCACTTATGGTTATGCTGCTCCAGAATACGTCATGACAGGACACTTGACTTCAAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTGCTTGAGATTTTAACAGGAAGAAGATCGATGGACAAGAAGCGCCCGAGTGGGGAACAAAGTCTTGTTTCATGGGCTAGGCCATATTTAGCAGACAAGCGAAAACTCTACCAACTCGTGGATCCTCGCTTGGAACTAAATTATTCTTTGAAAGGAGTGCAGAAAATTTCCCAGTTAGCTTATAGTTGCCTCAGTAGAGACCCCAAATGCCGTCCTAACATGGATGAAGTTGTGAAGGCTCTGACCCCATTGCAGGATCTTAACGACCTCGCAATCTTGTATCACTCTCGTTTATCACAGCAAGGGAGAAGAAAGAAGAAATCAGATGGAACTCCACATTTAACTTACACTCAGTCCAAGAGCATGAGGGCTTCTCCCTTGAATACCGGCAAGCAGCATCACCATCGATGA 1335 0.4562 MKLFSNHPAMEIEQKKKKCGCWSVLKRGVRGACKPSDSRDSANTIPRTSLVHDAATETRYLNASNRELFPPNEARLSSDNPDPAAAQENKAPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEEDGTAPAKPGSGVTVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKISLGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQSLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQKISQLAYSCLSRDPKCRPNMDEVVKALTPLQDLNDLAILYHSRLSQQGRRKKKSDGTPHLTYTQSKSMRASPLNTGKQHHHR* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1904 444 Pfam Protein tyrosine and serine/threonine kinase 114 389 IPR001245 GO:0004672|GO:0006468
Lja4g1904 444 MobiDBLite consensus disorder prediction 420 436 - -
Lja4g1904 444 SUPERFAMILY Protein kinase-like (PK-like) 92 398 IPR011009 -
Lja4g1904 444 MobiDBLite consensus disorder prediction 406 444 - -
Lja4g1904 444 CDD STKc_IRAK 116 392 - -
Lja4g1904 444 Gene3D Transferase(Phosphotransferase) domain 1 196 406 - -
Lja4g1904 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Lja4g1904 444 ProSitePatterns Protein kinases ATP-binding region signature. 116 148 IPR017441 GO:0005524
Lja4g1904 444 Gene3D Phosphorylase Kinase; domain 1 84 195 - -
Lja4g1904 444 PANTHER OS01G0588500 PROTEIN 75 412 - -
Lja4g1904 444 ProSiteProfiles Protein kinase domain profile. 110 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1904 444 PANTHER OS01G0588500 PROTEIN-RELATED 75 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1904 Lja-Chr4 19075112 19078453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1904 65 389 Glycoside Hydrolase AT3G07070 51.064 2.20e-110 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja4g1904 PK_Tyr_Ser-Thr 8.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1904 - - aprc:113848012 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1904 4 19075112 19078453 Lja4g1904 4 19075112 19078453 ECH