Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1880 ATGGCTATCACTGTTTTATACTTGGTGATATTGCTGCAATTGTCAACATTTTTGGGGTCTTCAGTTGTGTTACAGTCAAAGGAGTGTGGGACTGATTGGTTAGCTCATTCATATTCTAGTCATGGTCAGGAACTGTTCTACATAAATGGGAATGTGGTAAACCAAGTTTCTTTCTGTGAGGCTCTCCAATTGTATATTGCAAACGGCTGTGATGTGAAGGACTACTTTGGAAGTAGCGGTTGTGCGGTCGGAGGCTCTTTCGTGAATTTTCCTTCAAAAGCTGGGAGGAAACTCTTGCAGAAGGATTCAAGCAAAGAATCCACATCACAAGGAGATTCTAAGGCTCTACCAACCAACAAAGTTGGTATTTTTGCAGGTGGAGCTTTGTTGGCATGTTGTGCTGTTCTTTGTCCTTGTTTCTATGGGAAGAAACGGAAAGCTACCGCTCATGCTGTTCTGGCGAAGGACCCAATTTCAATGGATTCAGCTACCTCCTTTGACGCCTCCGTTTCTGCCTCCGTTTCGGGCAAGATCCCAGCGAGTCCACTTCGGGTGCCATCAAGTCCATCAAGATTTTCAATGTCTCCAAAGCTCAGTAGACTTCATACATTAAATCTCAACCTGAGTCAGGTTGTAAGAGCTACCCGTAATTTCTCAGAAACATTACAAATAGGACAAGGAGGTTTTGGAACTGTCTACAAGGCTAATTTAGAAGATGGCCTGGTCGTGGCTGTAAAGCGTGCGAAAAGGGAGCATTTTGAGAGCTTGAGAACAGAGTTCAGCAGTGAAGTTGAACTTCTGGCCAAAATTGATCATCGAAACTTGGTGAAGCTACTAGGTTTTATTGACAAAGGAAATGAACGCATTCTTATAACAGAGTATGTACCTAACGGTACTCTTCGAGAACACTTGGATGGCCTGCGTGGGAAAATCCTGGACTTCAATCAGCGCCTCGAAATTGCAATTGATGTTGCTCATGGATTGACCTACTTGCACCTGTATGCAGAAAAGCAAATTATCCACCGAGATGTGAAATCATCCAACATTCTTCTCACAGAAAGCATGCGAGCTAAAGTTGCAGACTTTGGATTTGCAAGGCTTGGTCCAGTGAACGGTGACCAAACACATATTTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGACCCTGAGTATATGAAAACACACCAACTCACTCCCAAAAGTGATGTTTACTCATTTGGAATTTTGCTTTTAGAGATACTGACAGGCCGCCGTCCTGTGGAGTTGAAGAAAGCTGCTGATGAGCGGGTTACACTAAGATGGGCCTTCAGGAAGTATAATGAAGGAAGTGTGGTGGAACTGATGGATCCTTTAATGGAAGAAGCTGTGAACGCAGATGTTCTCATGAAGATGCTTGATTTGTCATTTCAATGTGCAGCACCCATTCGAACAGATCGACCTAACATGAAATCAGTGGGTGAGCAATTGTGGGCAATAAGGGCAGATTATCTCAAGAGTGCAAGGAGAGAATGA 1515 0.4356 MAITVLYLVILLQLSTFLGSSVVLQSKECGTDWLAHSYSSHGQELFYINGNVVNQVSFCEALQLYIANGCDVKDYFGSSGCAVGGSFVNFPSKAGRKLLQKDSSKESTSQGDSKALPTNKVGIFAGGALLACCAVLCPCFYGKKRKATAHAVLAKDPISMDSATSFDASVSASVSGKIPASPLRVPSSPSRFSMSPKLSRLHTLNLNLSQVVRATRNFSETLQIGQGGFGTVYKANLEDGLVVAVKRAKREHFESLRTEFSSEVELLAKIDHRNLVKLLGFIDKGNERILITEYVPNGTLREHLDGLRGKILDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTESMRAKVADFGFARLGPVNGDQTHISTKVKGTVGYLDPEYMKTHQLTPKSDVYSFGILLLEILTGRRPVELKKAADERVTLRWAFRKYNEGSVVELMDPLMEEAVNADVLMKMLDLSFQCAAPIRTDRPNMKSVGEQLWAIRADYLKSARRE* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1880 504 CDD STKc_IRAK 224 490 - -
Lja4g1880 504 PANTHER NODULATION RECEPTOR KINASE-LIKE PROTEIN 18 503 - -
Lja4g1880 504 SUPERFAMILY Protein kinase-like (PK-like) 200 493 IPR011009 -
Lja4g1880 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 339 351 IPR008271 GO:0004672|GO:0006468
Lja4g1880 504 Gene3D Transferase(Phosphotransferase) domain 1 295 503 - -
Lja4g1880 504 SMART serkin_6 218 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1880 504 PANTHER OS07G0166700 PROTEIN 18 503 IPR045272 GO:0004714|GO:0006468
Lja4g1880 504 ProSitePatterns Protein kinases ATP-binding region signature. 224 246 IPR017441 GO:0005524
Lja4g1880 504 Pfam Protein tyrosine and serine/threonine kinase 223 490 IPR001245 GO:0004672|GO:0006468
Lja4g1880 504 Gene3D Phosphorylase Kinase; domain 1 187 294 - -
Lja4g1880 504 ProSiteProfiles Protein kinase domain profile. 218 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1880 Lja-Chr4 18750769 18755396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1880 190 494 Receptor kinase-like Gene Family AT3G46290 45.806 3.16e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Lja4g1880 PK_Tyr_Ser-Thr 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1880 - - aprc:113845864 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1880 4 18750769 18755396 Lja4g1880 4 18750769 18755396 ECH