Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1879 ATGTCCACCAACCACTTATCTAATGGCGACTCCGAGCATCGCCTTCGTCAACCCTTGCTCTCCTCTCAAAGATCCATCATCAATTCCTCCTCCCAAGTTGCCATCGTTGGTGCCAATGTCTGCCCCATTGAAAGCCTCGATTACGAGATTTTTGAAAACGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGGTCGCTTCAGATTTTCCAGTATGTGTTGATGAAGTGGCTCTTGTGCTTTCTAATTGGTACCATCCTTGGTCTTATTGGTTTTTGCAACAATCTTGCTGTTGAGAATCTTGCTGGTGTGAAGTTTGTTGTCACATCCAACATGATGTTGCATAAGAGGTTTTCATTGGCTTTTGTAACATTTTTTGCTTCGAATTTGGCTCTCACGCTTTTCGCCACTATAATAACTGCTATGATAGCACCTGCTGCTGCTGGTTCAGGTATATCAGAGGTGAAGGCTTACCTAAATGGCGTAGATGCACCTGGAATATTTACCCTACCAACTCTGATTGTTAAGATTATTGGAAGCATCACAGCTGTGTCATCATCTCTTCATATTGGGAAGGCAGGGCCTATGTTGCATACAGGTGCATGTGTGGCAGCATTGTTGGGCCAGGGTGGGTCAAAGAGATATGGGTTAACATGGAAATGGTTACGATATTTTAAGAACGACCGAGATCGACGAGATTTAATTGTATGTGGTTCAGCAGCTGGGATTGCCGCTGCCTTTCGTGCCCCTGTTGGTGGGGTGTTGTTTGCCCTCGAAGAGATGGCATCTTGGTGGAGAACTGCCCTTCTGTGGAGAGCTTTCTTTACAACAGCAATAGTTGCAATTTTCCTCCGTGCTATGATTGATGTATGTTTAAGTGGTAAATGCGGGTTATTTGGTAAAGGGGGACTGATAATGTTCGATGCTTATTCAGGAAGTCTTATGTATCATGCAAAGGATGTTCCTCTTGTGTTTATTCTTGGTGTTATAGGGGGGATCCTTGGAAGCTTATATAATTATTTGTGGAACAAAGTTCTTCGCATATACAACGCTATCAATGAGAAAGGCACCATTTGCAAAATTTTGCTTGCTTGTGTGATCTCCATGTTTACGTCCTGTCTTCTTTTCGGATTACCATGGCTTGCATCTTGCCAGCCTTGCCCAGCTGATCCAGTCGAGCCTTGTCCTACAATCGGTCGGTCTGGTATCTACAAGAAATTCCAATGCCCTCCTGGTCACTACAATGATCTTGCCAGCCTCATTTTCAACACAAATGATGATGCTATCAGAAATCTGTTTAGCAAGAACACGGACAGCGAGTTCCAGTATTCGTCAATGTTCATCTTTTTCATCACAGGCTTCTTTTTAAGTATCCTTAGCTGTGGAGTGGTTGTTCCAGCCGGTGTTTTTGTGCCAATTATCGTGACCGGTGCATCTTATGGACGCTTTGTCGGAATGTTGTTTGGTAAAAAGTCCAACCTTAACCATGGCCTTTATGCTGTACTCGGCGCTGCTTCATTCCTCGGTGGATCTATGAGGACAACCGTTTCTCTATGTGTAATTATTCTAGAACTGACCAACAACTTGTTATTGCTACCCCTTATCATGATGGTGCTTTTGGTATCTAAGTCTGTAGCAGATGTTTTCAATGCAAATATATATGATCTTATAATGAAATCCAAGGGTTTACCTTATTTAGAAACTCATGCTGAGCCATATATGAGGCAGCTAACAGTAGGTGATGTAGTCACAGGCCCACTTCAGATATTTCATGGCTATGAGAAGGTCCGTAATGTAGTGTTTGTCCTCAAAACTACGAGTCACAATGGTTTTCCTGTTATTGATGAGCCTCCATTTTCTGAAGCTCCTGTTTTATTCGGTATAATCCTTCGTCACCATCTTCTCACATTGTTAAGGAAGAAAGTTTTCATGTCGGCACCTATGGCAATGGGAGGTGATGTCTTGAGACAGTTTTCAGCAGATGATTTTGCAAAGAGAGGTTCAGACAGGGGCGAAAGGATTGAGGATATACATTTAACACAGGAAGAGATGGACATGTTCATTGATCTACATCCTTTTACCAATGCTTCGCCTTATACTGTTGTAGAATCGATGTCACTGGGGAAGGCGCTTATACTTTTTCGAGAGCTTGGTTTAAGGCACTTGCTAGTGATACCCAAGATCCCCAGTAGATCACCTGTGGTGGGTATACTGACACGACACGATTTCACAGCAGAACACATATTGGGCACGCATCCTTATCTAGTAAGAAGCAGGTGGAAAAGATTAAGATTTTGGCAACCATTTCTAGAAAATTTCTTTTGGTCATCTCAGCTGCAAGGCTAG 2343 0.4302 MSTNHLSNGDSEHRLRQPLLSSQRSIINSSSQVAIVGANVCPIESLDYEIFENEFFKQDWRSRGSLQIFQYVLMKWLLCFLIGTILGLIGFCNNLAVENLAGVKFVVTSNMMLHKRFSLAFVTFFASNLALTLFATIITAMIAPAAAGSGISEVKAYLNGVDAPGIFTLPTLIVKIIGSITAVSSSLHIGKAGPMLHTGACVAALLGQGGSKRYGLTWKWLRYFKNDRDRRDLIVCGSAAGIAAAFRAPVGGVLFALEEMASWWRTALLWRAFFTTAIVAIFLRAMIDVCLSGKCGLFGKGGLIMFDAYSGSLMYHAKDVPLVFILGVIGGILGSLYNYLWNKVLRIYNAINEKGTICKILLACVISMFTSCLLFGLPWLASCQPCPADPVEPCPTIGRSGIYKKFQCPPGHYNDLASLIFNTNDDAIRNLFSKNTDSEFQYSSMFIFFITGFFLSILSCGVVVPAGVFVPIIVTGASYGRFVGMLFGKKSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLLVSKSVADVFNANIYDLIMKSKGLPYLETHAEPYMRQLTVGDVVTGPLQIFHGYEKVRNVVFVLKTTSHNGFPVIDEPPFSEAPVLFGIILRHHLLTLLRKKVFMSAPMAMGGDVLRQFSADDFAKRGSDRGERIEDIHLTQEEMDMFIDLHPFTNASPYTVVESMSLGKALILFRELGLRHLLVIPKIPSRSPVVGILTRHDFTAEHILGTHPYLVRSRWKRLRFWQPFLENFFWSSQLQG* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1879 780 CDD CBS_pair_voltage-gated_CLC_euk_bac 568 742 - -
Lja4g1879 780 SUPERFAMILY CBS-domain pair 568 743 IPR046342 -
Lja4g1879 780 Pfam CBS domain 696 742 IPR000644 -
Lja4g1879 780 Gene3D Clc chloride channel 67 564 - -
Lja4g1879 780 PRINTS Chloride channel signature 464 484 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g1879 780 PRINTS Chloride channel signature 514 533 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g1879 780 PRINTS Chloride channel signature 496 512 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g1879 780 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g1879 780 PRINTS Chloride channel signature 552 566 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g1879 780 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g1879 780 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g1879 780 Pfam Voltage gated chloride channel 132 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g1879 780 PANTHER CHLORIDE CHANNEL PROTEIN 10 768 - -
Lja4g1879 780 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 10 768 - -
Lja4g1879 780 SMART cbs_1 696 747 IPR000644 -
Lja4g1879 780 SMART cbs_1 585 638 IPR000644 -
Lja4g1879 780 ProSiteProfiles CBS domain profile. 692 753 IPR000644 -
Lja4g1879 780 SUPERFAMILY Clc chloride channel 53 567 IPR014743 -
Lja4g1879 780 Gene3D - 565 745 IPR046342 -
Lja4g1879 780 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja4g1879 780 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja4g1879 780 PRINTS Plant CLC chloride channel signature 49 57 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja4g1879 780 PRINTS Plant CLC chloride channel signature 416 432 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja4g1879 780 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1879 Lja-Chr4 18741970 18747582 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1879 6 770 Ion Channels AT5G33280 73.725 0.0 1140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1879 K05016 - gmx:100817901 1215.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1879 4 18741970 18747582 Lja4g1879 4 18741970 18747582 ECH