Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1877 ATGCAGAACGAAGAAGGCCAGATCACCGAGCTCTACATTCCCAGGAAGTGTTCGGCCACAAACAGGTTGATCACTGCAAAGGACCATGCTTCCGTTCAGATCAACATTGGGCATTTGGATGAGAGTGGTGTCTACAATGGACAGTTCTCTACCTATGCTCTCTGTGGTTACATTCGTGCTCAGGGGGATGCTGACAGTGCTATAGATCGCCTGTGGCAGAAGAAGAAGGCTGAGATTAAGCAACAGTAG 249 0.49 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRAQGDADSAIDRLWQKKKAEIKQQ* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1877 82 Pfam Ribosomal protein S21e 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
Lja4g1877 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 - -
Lja4g1877 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Lja4g1877 82 Gene3D - 1 81 IPR038579 -
Lja4g1877 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Lja4g1877 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1877 Lja-Chr4 18725465 18726904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1877 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 81.481 7.83e-51 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1877 K02971 - gmx:100817753 159.458