Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja4g1874 | ATGGCTGCTCAATTTCCATGTGACCCCCAAGGCGTGTGCATGGTCTGCAAGGTTGTTCCCCCTGACGAGGAGAATCTCACCTGCAACACCTGCGCCACGCCATGGCATGCGCCTTGCCTCTCCTCCTCGCTTCCGGCCACCGTCGCCGCCACCAATGACTGGCAATGTCCCGATTGCACTAATCTCTTCTCGGCTCCGGTCAAATCGTGCCGGGACGGCCCAGACGGGGAGCTGGTTTCTGCTATCTTATCGGTGAAGGCTGATGAGTCTCTCACGGCGAGTCAGAAGGCTAGGAAATGCCAACAGCTCCTCGCCGGAAAGTCCGCCGCGGTCGAGGATGAGGATGAGGATGAGGATGAGGATGATGAAGAAGAAGACAAAAAGGATGACAACAACAACAACAACAACAACAACAAAATGTCTGTTTCTGATATTCTCACCCGCACTCTCAACTGCTCCATCTGCATTCAGCTTCCTGAGAGGCCTGTCACGACTCCTTGTGGACACAGTTTCTGTCTGAAGTGCTTTGAGAAATGGATTCGGCAAGGGAAAAGAACTTGTGCCAAGTGCAGGCAGAATATCCCTGCGAGCATGGCGAGCCAGCCTCGCATCAATTCTGCGCTAGTGTTTGCCATTCGTATGGCGAGGGCGTCAAAAGCGAATGGTGGTGCTGGTGCAGGGCCTTCCGGTGTTCGGCATTTCCTGCATAACCAAGATAGGCCAGACCAGGCGTATACTACTGACCGTGCACAGAGGAGTGGCCGAGCAAATGCCTGCAGTGGAAAGATTTTCGTGACTGTGCCGACTGATCATTTTGGTCCAATCCTTCCCCAGAATGACCCTTTGAGGAATCAGGGTCTGCTCGTCGGTGAATCTTGGCTGGATAGACTGGAATGCAGGCAATGGGGTGCTCACTTTGTGCATGTTGGTGGCATTGCTGGACAATCTGATAGGGGAGCACAGTCTGTTGTGCTTTCTGGAGGATATGTTGATGATCAGGATCATGGAGAATGGTTTCTCTATACTGGAAGCGGTGGTAAAGATCTTACTGGGAATAAGCGCACAAATAAGAACCATTCCTTTGATCAAAAATTTGAGAAGTACAACCGGGCACTTCAGTTAAGTTGCCTGAAAGGTTATCCAGTTCGAGTTGTCAGATCTCACAAAGAGAAGCGATCCTCATATGCCCCCGAGAAAGGAGTGCGGTATGATGGAATTTATAGAATTGAAAAATGTTGGCAGATAGCAGGAGTGCAGGGTTTCAAAGTCTGCCGATTTTTATTTGTTAGATGTGACAATGAACCTGCCCCATGGACAAGTGATGATCACGGGGACAGACCAAGGCCTTTACCAGCTGTCCGTGAGCTGAATAAGGCCACAGGCATACACGAAAGAACAGAAGCACCTGCTTGGGATTTTGATGAGGCGAATTCTTGCTGGAAATGGATGAAACCACCCCCTCTGAGTAGGAAAAAGATACAAACCGAGGAACCCACACCCACACAAATAGCTATATCAGCTAAAGAGGCTAAAAGGTTCCAATACATGTCGATCAAGGAACAATTGCGTAAAGGGTTCTCGTGCCTCATATGTAGTGAGGTTATGGTCTCACCAGTGACAACTCCATGTGCTCATAATTTCTGCAAGCCATGCTTAGAGGGTGTATTTGCTGGTAAGTCTTCTGTGAAGGAGAGAAGCAGGGGTGGGAGAACACTTCGGGCCCAGAAAGTTGTGATGAAGTGTCCTGGATGCACTGTTGACATCTCTGATTATCTTCAGAACCTTCAGGTTGATATAGATTTGAAGGGTGCGATTGAATCACTGAAAGCCAAGGCTGAAGAAAATGGAGAATCACTGGAGTCAAGTGAAGATGCAGATGCTTGCATGGATGAAGATACTGGCTCAGTGAAAGAAAACTCCGGGGAGGAGTTAAGTGGTTCAACTGGGACCAACAAGGCTACTGAAAATGGAGAACCATTGGTCTCAAGTGAAGATGCAGATGCTTGCAAGGATGAAGATACTGGCTCAGTGAAAGAAAACTCTGTGGAGGAGTTAAATGGTTCAACTGAGAGCAAAAAGGTGCCAGATCAAGCAGTGAAGCGCAATGCAAAGAGAAAGAAAAATGATTCTGGAGAACAATTGGCTGATAAGGGTGATGGTCAAAAGGCTAAAAGAGGTAGAAAATCCAGAAAAGTTGAGAAAGCAGTGAATGAAGCAAATGATTCTCCATCCAGTCCATTAGATCACCAGTAA | 2253 | 0.482 | MAAQFPCDPQGVCMVCKVVPPDEENLTCNTCATPWHAPCLSSSLPATVAATNDWQCPDCTNLFSAPVKSCRDGPDGELVSAILSVKADESLTASQKARKCQQLLAGKSAAVEDEDEDEDEDDEEEDKKDDNNNNNNNNKMSVSDILTRTLNCSICIQLPERPVTTPCGHSFCLKCFEKWIRQGKRTCAKCRQNIPASMASQPRINSALVFAIRMARASKANGGAGAGPSGVRHFLHNQDRPDQAYTTDRAQRSGRANACSGKIFVTVPTDHFGPILPQNDPLRNQGLLVGESWLDRLECRQWGAHFVHVGGIAGQSDRGAQSVVLSGGYVDDQDHGEWFLYTGSGGKDLTGNKRTNKNHSFDQKFEKYNRALQLSCLKGYPVRVVRSHKEKRSSYAPEKGVRYDGIYRIEKCWQIAGVQGFKVCRFLFVRCDNEPAPWTSDDHGDRPRPLPAVRELNKATGIHERTEAPAWDFDEANSCWKWMKPPPLSRKKIQTEEPTPTQIAISAKEAKRFQYMSIKEQLRKGFSCLICSEVMVSPVTTPCAHNFCKPCLEGVFAGKSSVKERSRGGRTLRAQKVVMKCPGCTVDISDYLQNLQVDIDLKGAIESLKAKAEENGESLESSEDADACMDEDTGSVKENSGEELSGSTGTNKATENGEPLVSSEDADACKDEDTGSVKENSVEELNGSTESKKVPDQAVKRNAKRKKNDSGEQLADKGDGQKAKRGRKSRKVEKAVNEANDSPSSPLDHQ* | 751 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja4g1874 | 750 | SUPERFAMILY | PUA domain-like | 256 | 451 | IPR015947 | - | |
| Lja4g1874 | 750 | Gene3D | - | 253 | 449 | IPR036987 | - | |
| Lja4g1874 | 750 | SUPERFAMILY | RING/U-box | 520 | 610 | - | - | |
| Lja4g1874 | 750 | MobiDBLite | consensus disorder prediction | 107 | 140 | - | - | |
| Lja4g1874 | 750 | ProSiteProfiles | Zinc finger RING-type profile. | 528 | 585 | IPR001841 | - | |
| Lja4g1874 | 750 | PANTHER | FINGER PROTEIN, PUTATIVE-RELATED | 3 | 718 | - | - | |
| Lja4g1874 | 750 | ProSiteProfiles | Zinc finger PHD-type profile. | 10 | 62 | IPR019787 | - | |
| Lja4g1874 | 750 | ProSiteProfiles | YDG domain profile. | 282 | 430 | IPR003105 | - | |
| Lja4g1874 | 750 | ProSiteProfiles | Zinc finger RING-type profile. | 152 | 191 | IPR001841 | - | |
| Lja4g1874 | 750 | CDD | RING-HC | 152 | 190 | - | - | |
| Lja4g1874 | 750 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 506 | 630 | IPR013083 | - | |
| Lja4g1874 | 750 | ProSitePatterns | Zinc finger RING-type signature. | 543 | 552 | IPR017907 | - | |
| Lja4g1874 | 750 | MobiDBLite | consensus disorder prediction | 664 | 723 | - | - | |
| Lja4g1874 | 750 | Pfam | SAD/SRA domain | 285 | 433 | IPR003105 | - | |
| Lja4g1874 | 750 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 3 | 718 | IPR045134 | - | |
| Lja4g1874 | 750 | ProSitePatterns | Zinc finger PHD-type signature. | 13 | 59 | IPR019786 | - | |
| Lja4g1874 | 750 | SUPERFAMILY | RING/U-box | 145 | 198 | - | - | |
| Lja4g1874 | 750 | SMART | PHD_3 | 12 | 60 | IPR001965 | - | |
| Lja4g1874 | 750 | Pfam | RING-type zinc-finger | 528 | 568 | IPR027370 | - | |
| Lja4g1874 | 750 | MobiDBLite | consensus disorder prediction | 613 | 750 | - | - | |
| Lja4g1874 | 750 | SMART | ring_2 | 528 | 584 | IPR001841 | - | |
| Lja4g1874 | 750 | SMART | ring_2 | 13 | 59 | IPR001841 | - | |
| Lja4g1874 | 750 | SMART | ring_2 | 152 | 190 | IPR001841 | - | |
| Lja4g1874 | 750 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 217 | IPR013083 | - | |
| Lja4g1874 | 750 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 62 | IPR013083 | - | |
| Lja4g1874 | 750 | MobiDBLite | consensus disorder prediction | 221 | 253 | - | - | |
| Lja4g1874 | 750 | SMART | G9a_1 | 277 | 434 | IPR003105 | - | |
| Lja4g1874 | 750 | Pfam | Zinc finger, C3HC4 type (RING finger) | 152 | 190 | IPR018957 | GO:0046872 | |
| Lja4g1874 | 750 | MobiDBLite | consensus disorder prediction | 111 | 128 | - | - | |
| Lja4g1874 | 750 | SUPERFAMILY | FYVE/PHD zinc finger | 4 | 61 | IPR011011 | - | |
| Lja4g1874 | 750 | MobiDBLite | consensus disorder prediction | 639 | 658 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja4g1874 | Lja-Chr4 | 18457450 | 18461678 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja4g1874 | 1 | 619 | C2H2 Transcription Factor Family | AT5G39550 | 56.938 | 0.0 | 702 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja4g1874 | K10638 | - | gmx:100801535 | 992.26 |