Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1855 ATGGGGAACAAAAAGAAGCAAGTAGGAGAAGCAAATGAAGATAGAGGATATGACAATGATACTATGGTATTTATATCCATGTCTCAAGAGTTGAAGGATGAGGGGAACAAGCTGTTCCAAAAGAGGGATCTCGAGGGAGCTATGCTAAAATATGAGAAAGCCCTCAAATTGCTTCCGAGGAATCACGCTGATGTGTCCTATCTACGGAGTAACATGGCTGCGTGTTACATGCAGATGGGGATCACGGAGTATCCGAGGGCGATTCATGAGTGCAATCTGGCTCTTGAAGTGACACCGAAATACAGTAAAGCTCTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTGAATAGACTGGATTTAGCTCTGAGAGATGTGAGTGCTGTTTTGAAGACAGAGCCGAATAATGTCATGGCATTGGAGGTCTCAGAAAAGGTGAAAAATGCACTTGAGGAGAAAGGATTAAGAGTGAATGATACAGTAATTGAGTTACCTCCAGATTATGTTGAACCTCCTAATGCTTTGCCTCCAGAAAAGGTTGTGAAAGAGAAGACACGAAAGAAGAAGAGCAATAAAGAGGAAGAGAAGCCACGTGATAAAAAAGTTCTAGAAAAGCAGGCTGAGGAGAAACTTGAAGAGAAGAAGTCTGAGGATCGTATAAATGTAGTAGAGAGGAAGACCAACACGTCCAAAAAGAAGAAGGCCAAGGAAAAATTTTATGAGAAGAAGGCTGATATTAAGGAAGTTGTAGAGGAGAAAAGTAAGGGTAGAAAGGAAGATGTACCTAAGAAAACAGCAAAACTGATTTTTGGTGAAGATATAAGATGCGCTGAATTGCCTGCTAATTTTAGCCTCTTGCAGTTAAGAGAAGTTATTCATGACCGATTCCCAGGCCTAGGAGCTTTTCTTGTCAAATACAGGGACCACGAAAGTGATTTGGTCACAATCACTTCTGACGAAGAATTAAAATGGGCTGAAACAGGATCTCATGGTTCTATTCGCGTGTACGTAGTAGAAGTTACTCCTCAGCAGCAGGATCCATTTTTTGAGAACCACAAAGTAAAGGAGGCGAAAATGGTTGGCATTAACAACGTACCTGAGAATGGTTGTGTGGTAAAGGCAAAGGAAGTTATTAGCTCATCTTGTATTGAGGATTGGATACTTCAGTTTGCCAAACTGTTCAAGAACCATGTTGGGTTTGAATCTGACAGATACTTGGATTTTCATGAACTTGGGATGAAGCTCTATTCTGAGGCTTTGGAGGAGACAGTTACAAGTGAAGAAGCTCAATGCCTATTTGACATGGCAGGAGATAAGTTTCAAGAGATGACTGCTCTGGCATTGTTCAACTGGGGAAATGTGCATATGTCCAGAGCAAGGAAGAAAGTATATTTCACAGAAGATTCTTCTAAAGAGAATCTATGTGAACAAATCAAAAGTTCATATGACTGGGCACAGAAAGAATACGCGAAAGCAGGAGAACAATATGAAGCAGCCATTAAAATAAAGGCAGATTTTTATGAAGGGTTTCTTGCACTAGGACAGCAGAAGTTTGAGCTAGCAAAACTTTCTTGGTATCATGCACTCAGTAGTAATGTGGATTTAGTAACATGGCCTGCCACTGAGGTTCTTCAGCTTTACAATAGCGCTGAGGAAAATATGGAGAAAGGAATGCAGATATTGGAAAAATCAAAAGACCAACACTTGAGTAAAATCTCCGATTCGAAGGATGTTGGATTAAATTTACAGAGCATGGAGTTGGATGGCCTTTTTAAAATTATATCCTCAGATGAAATTGCTGCACAGGAGGCAAATATGAGGTCTCAAGTAAATCTTCAATGGGGTACCATGCTGTATGAACGCTCAATTGTAGAGTTCAAATTAGGGATACCAATATGGCATGAATCTCTAGAAGCTGCGTTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCTACTGATATAGCTGTGATGTTGAAGAACCACTGTTCAAATAATACTGCAGTAGATGGTCTAGCATTCCAAATCGATGAAATAGTACAAGCATGGAATGAGATGTACAAAGCAAAGAAGTGGCAGAGTGGAGTTCCTTCATTTCGATTGGAACCCTTATTCAGAAGGCGAGTTTCAAAAATTTGTCATGACTTTGATCTTGCATGA 2154 0.4044 MGNKKKQVGEANEDRGYDNDTMVFISMSQELKDEGNKLFQKRDLEGAMLKYEKALKLLPRNHADVSYLRSNMAACYMQMGITEYPRAIHECNLALEVTPKYSKALLKRARCYEALNRLDLALRDVSAVLKTEPNNVMALEVSEKVKNALEEKGLRVNDTVIELPPDYVEPPNALPPEKVVKEKTRKKKSNKEEEKPRDKKVLEKQAEEKLEEKKSEDRINVVERKTNTSKKKKAKEKFYEKKADIKEVVEEKSKGRKEDVPKKTAKLIFGEDIRCAELPANFSLLQLREVIHDRFPGLGAFLVKYRDHESDLVTITSDEELKWAETGSHGSIRVYVVEVTPQQQDPFFENHKVKEAKMVGINNVPENGCVVKAKEVISSSCIEDWILQFAKLFKNHVGFESDRYLDFHELGMKLYSEALEETVTSEEAQCLFDMAGDKFQEMTALALFNWGNVHMSRARKKVYFTEDSSKENLCEQIKSSYDWAQKEYAKAGEQYEAAIKIKADFYEGFLALGQQKFELAKLSWYHALSSNVDLVTWPATEVLQLYNSAEENMEKGMQILEKSKDQHLSKISDSKDVGLNLQSMELDGLFKIISSDEIAAQEANMRSQVNLQWGTMLYERSIVEFKLGIPIWHESLEAAFEKFELAGASPTDIAVMLKNHCSNNTAVDGLAFQIDEIVQAWNEMYKAKKWQSGVPSFRLEPLFRRRVSKICHDFDLA* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1855 717 ProSiteProfiles TPR repeat profile. 102 135 IPR019734 GO:0005515
Lja4g1855 717 PANTHER PROTEIN PHOX3 4 715 - -
Lja4g1855 717 ProSiteProfiles PB1 domain profile. 262 339 IPR000270 GO:0005515
Lja4g1855 717 SUPERFAMILY TPR-like 29 141 IPR011990 GO:0005515
Lja4g1855 717 SUPERFAMILY CAD & PB1 domains 265 345 - -
Lja4g1855 717 CDD PB1 266 336 - -
Lja4g1855 717 SMART PB1_new 262 339 IPR000270 GO:0005515
Lja4g1855 717 ProSiteProfiles TPR repeat profile. 28 61 IPR019734 GO:0005515
Lja4g1855 717 Coils Coil 546 566 - -
Lja4g1855 717 MobiDBLite consensus disorder prediction 164 201 - -
Lja4g1855 717 MobiDBLite consensus disorder prediction 176 201 - -
Lja4g1855 717 SMART tpr_5 66 101 IPR019734 GO:0005515
Lja4g1855 717 SMART tpr_5 28 61 IPR019734 GO:0005515
Lja4g1855 717 SMART tpr_5 102 135 IPR019734 GO:0005515
Lja4g1855 717 Gene3D - 263 342 - -
Lja4g1855 717 Gene3D Tetratricopeptide repeat domain 26 157 IPR011990 GO:0005515
Lja4g1855 717 PANTHER PROTEIN CLMP1 4 715 IPR044517 -
Lja4g1855 717 Pfam PB1 domain 264 337 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1855 Lja-Chr4 18169719 18183054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1855 13 135 Calmodulin-binding Proteins AT3G25230 29.545 1.09e-07 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1855 4 18169719 18183054 Lja4g1855 4 18169719 18183054 ECH
Lja4g1855 4 18169719 18183054 Lja6g1859 6 45927300 45931631 PCT