Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1843 ATGGGAAGTAATGGCACCGAAGAGATCACTAGCGATATCAGCACTGGAAATGCAGACACCACTATTGAGATAAAGATCAAAATGTTGGATTCCCAAACTTTTACCCTCAGAGTGGATAAACAGATGCCGGTCCCTGCTCTGAAAGCACAGATTGAATCTTTAACTGGAGTGATGTCAGAAAGGCAGCGCTTAATTTGCCAAGGGAAAGTTCTAAAGGATGATCAACTCCTGTCTGCCTATCATGTTGAAGATGGTCATACCTTGCATCTGGTTGCAAGGCATCCTGATCTAACACCACCAGGAAGTTTGCCCAATCATTCAGCGACTGAACCAAATTCAAGCACAGGCCATGGTTATAGTAATCAAGTAGCCCCGGGGGTATTTATTGAAACTTTCAATGTGCCTGTTCAGGGCGATGGAGTTCCTTCTGAAATCAATAGGATTGTTTCTGCTGTCCTTGGCTCTATGGGGCTTCCAAATTTCGCAAGTGGTGGTGAAGGGATTTTTGTCAGGGAGCATGATTCAACAGGCTTAGGAAGAACTTCGGATTTTACTGGAAATCCATCTCGTCCACAACCTGAACAAGCAGGTTTCCGGATTTCGTCAGATAGTTCGCGTAATTCTTTTGGATTTCCAGCAGCAGTTTCTCTAGGGTCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTTGCAATACCTAAGTCATATAAACCATGAGTTTGACACAATTGCTAGAGAAGGGGGGAATAATGTCCAAGCAGCTGAGGCTCATAGGAATGAAGAAAGGGGATTCGTTTCTTCACGTTTGAGTTCAACACCAGAAGGACTTTCATCTCCGGCATCCTTGGCAGAAGTCTTACTTTCTACCAGACGGATGATCATTGAACAAGCTGGGGAGTGCCTACTTCAACTTGCTAGACAGCTGGAGAATCATGCAGATATTGCTGATCCCTTGTCGCGGTCAAGCACTCAATCTAGGGCTTTGAGGACTGGAGTTATGTTTTATAACCTTGGTGCATATTTGCTTGAGCTTGGTCGCACAACCATGACTTTGCGTCTGGGTCAAACACCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTTATATCGCCATCTGGTCCTAACCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCAAGCTTTGGTGCTATCCCTGTGGGAGCTGCACAGTCTAACTCAAGTTTAGGCGGTGGACTTGGCTCAAGTTTTTTCCCAAGGCGTATTGATATACAGATAAGACGAGGAGCATCAACCACACCTGGTACCAATCAGGAAGAGCATGGTGATACACAATCTGCTTCAGTCCAAAGAAATACAGGTGAAAGTTCTGTTAATCAAACAACCTCTAGGCGTCCGGATGCATCTATTGCGGGGGAGCCAGGAGTAAGGGTTGTGCCAATTAGAACCATGGTCGCAGCAGTACCAGTTCTTGGGAGATTTCAATCTTCTGTGAATACAAATAATGAACAGGGATCTCAACCAGCAAGTCAGCAACATGCTGCGCCACATTCAACTGCTGAGTTCACATTGCATAGGCAAAGCATGGAAGATTCTGCAAGGAATGGAACCTTACCAACTCCAAATACACAACAAGAGCCATCAAGTTCTCGTGTTGTAAATATCAATATTCTGTCAGCTGGTGGGCCTGAAAACAATGAATCTGAGAGACAGGTACCAAGCAGTGTGCTTCAGTTTTTAAGGGCACTCTTTCCTGGTGGAGAAATTCATGTGGAAGATCCAAGTTCACAAGGAACAACTGCGGGGGTTACCTCTGCTGCAACATCAAGCGGTGCTGCTCAAGCCCCTGAAGCAGAACCCAATGTTAGTGAAGAAGGAATATTTTTGTCTAATTTACTCCGTGGGATCATGCCTGTCATATCTCAACATATAGGGCGAGGGGGAGATTCTTCTGAAGATCAAGTGACTCGAGATCCATCGACCCAGGTTGAAATTGGTGCTGGGACATCACGCAGACAGAGTGATTCTGAATCAAGCCCTCCTAATTCAAAGCGTCAAAAGATGGAGTGA 2076 0.4542 MGSNGTEEITSDISTGNADTTIEIKIKMLDSQTFTLRVDKQMPVPALKAQIESLTGVMSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVARHPDLTPPGSLPNHSATEPNSSTGHGYSNQVAPGVFIETFNVPVQGDGVPSEINRIVSAVLGSMGLPNFASGGEGIFVREHDSTGLGRTSDFTGNPSRPQPEQAGFRISSDSSRNSFGFPAAVSLGSLGSLQPPVIPDSLTTLLQYLSHINHEFDTIAREGGNNVQAAEAHRNEERGFVSSRLSSTPEGLSSPASLAEVLLSTRRMIIEQAGECLLQLARQLENHADIADPLSRSSTQSRALRTGVMFYNLGAYLLELGRTTMTLRLGQTPSEAVVNGGPAVFISPSGPNHIMVQPLPFQPGASFGAIPVGAAQSNSSLGGGLGSSFFPRRIDIQIRRGASTTPGTNQEEHGDTQSASVQRNTGESSVNQTTSRRPDASIAGEPGVRVVPIRTMVAAVPVLGRFQSSVNTNNEQGSQPASQQHAAPHSTAEFTLHRQSMEDSARNGTLPTPNTQQEPSSSRVVNINILSAGGPENNESERQVPSSVLQFLRALFPGGEIHVEDPSSQGTTAGVTSAATSSGAAQAPEAEPNVSEEGIFLSNLLRGIMPVISQHIGRGGDSSEDQVTRDPSTQVEIGAGTSRRQSDSESSPPNSKRQKME* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1843 691 MobiDBLite consensus disorder prediction 432 469 - -
Lja4g1843 691 MobiDBLite consensus disorder prediction 92 118 - -
Lja4g1843 691 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 1 691 - -
Lja4g1843 691 MobiDBLite consensus disorder prediction 645 691 - -
Lja4g1843 691 MobiDBLite consensus disorder prediction 595 618 - -
Lja4g1843 691 Pfam Ubiquitin family 24 93 IPR000626 GO:0005515
Lja4g1843 691 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 1 691 - -
Lja4g1843 691 Gene3D - 15 107 - -
Lja4g1843 691 SMART ubq_7 22 93 IPR000626 GO:0005515
Lja4g1843 691 MobiDBLite consensus disorder prediction 590 624 - -
Lja4g1843 691 MobiDBLite consensus disorder prediction 176 203 - -
Lja4g1843 691 MobiDBLite consensus disorder prediction 179 203 - -
Lja4g1843 691 MobiDBLite consensus disorder prediction 499 554 - -
Lja4g1843 691 MobiDBLite consensus disorder prediction 264 283 - -
Lja4g1843 691 MobiDBLite consensus disorder prediction 102 118 - -
Lja4g1843 691 MobiDBLite consensus disorder prediction 656 683 - -
Lja4g1843 691 CDD Ubl_ubiquitin_like 24 91 - -
Lja4g1843 691 MobiDBLite consensus disorder prediction 432 473 - -
Lja4g1843 691 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lja4g1843 691 PRINTS Ubiquitin signature 74 95 IPR019956 -
Lja4g1843 691 PRINTS Ubiquitin signature 53 73 IPR019956 -
Lja4g1843 691 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Lja4g1843 691 SUPERFAMILY Ubiquitin-like 18 95 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1843 Lja-Chr4 18036021 18045086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1843 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 3.26e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1843 K23390 - gmx:100783070 960.674
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1843 4 18036021 18045086 Lja4g1843 4 18036021 18045086 ECH