Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1841 ATGTGTGTGCAGGACGGTGAGCAAGTTGCTCAAGATATGGAGGGAGAAGTTGATAACAACAGAAGAAGGGTGTCATGGCCTTTGCATTGTGTTCCCTTGCATACCCAGATGGAAAACATGGAAAAAGACTCTTCTCAAAGAGACCAATTCAGTGTTGCAAATTCATTTCCTCTGGAAAGCATATGTGAGGATGCAGAAACTACCGAGAAAAAACATAACATGATGAATTTTGTCCCTACTCTTCGGTCTGGAGAGTGGTCTGATATTGGAGGTCGCCCTTACATGGAGGATACCCACATATGCATTGGAGACTTGGCAAAGAAATTTGGATATAATGTGCTCGGCGAGGAAGCCATTTCCTTCTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCGGCACAATTTGTCCGTGATCATCTGCCGAGGGTGATTGTTGAGGATGCAGACTTCCCTTTGGAACTTGAGAAGGTGGTGACAAAGTCATTTTTGGAGACTGATGCAGAGTTTGCTAAGACATGCTCTAGTGAGTCTTCGGGTACAACTGCACTCACTGCAATTATATTGGGAAGGTCTTTACTTGTAGCCAACGCCGGAGACTGCCGCGCTGTTCTATCCCGGTCTGGAGCGGTCATGGAAATGTCCAAGGATCACAGGCCCTTGTGCATGAAAGAAAGGACGCGGGTCGAGTCTCTAGGAGGATTCATTGATGACGGCTACCTGAATGGTCAGTTAGGTGTCACTCGTGCTCTAGGCGACTGGCATCTTGAAGGAATGAAGGAAATGAGTGGAAGAGGAGGACCCTTGAGTGCCGAGCCTGAACTTAAACTGGTGACACTGACCAAGGAAGATGAATTCCTGATAATCGGCAGTGATGGAATCTGGGACGTTTTTCGCAGCCAAAATGCCGTTGATTTTGCTCGAAGGAGGCTTCAAGAGCACAATGATGTGAGACAGTGTTGCAAGGAAATTATAGGGGAAGCAATGAAGAGAGGAGCAACAGACAACTTGACAGTTGTGATGGTGTGTTTTCACTCAGATCCACCACCACCTGTGGTTGTTGAAAGGCCTAGATTCAGGAGAAGTATATCTGCTGAGGGACTGCAGAATCTTAAATGTCTGCTAGAAGGATAG 1134 0.4665 MCVQDGEQVAQDMEGEVDNNRRRVSWPLHCVPLHTQMENMEKDSSQRDQFSVANSFPLESICEDAETTEKKHNMMNFVPTLRSGEWSDIGGRPYMEDTHICIGDLAKKFGYNVLGEEAISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTKSFLETDAEFAKTCSSESSGTTALTAIILGRSLLVANAGDCRAVLSRSGAVMEMSKDHRPLCMKERTRVESLGGFIDDGYLNGQLGVTRALGDWHLEGMKEMSGRGGPLSAEPELKLVTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVRQCCKEIIGEAMKRGATDNLTVVMVCFHSDPPPPVVVERPRFRRSISAEGLQNLKCLLEG* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1841 377 Pfam Protein phosphatase 2C 94 336 IPR001932 -
Lja4g1841 377 ProSiteProfiles PPM-type phosphatase domain profile. 82 344 IPR001932 -
Lja4g1841 377 ProSitePatterns PPM-type phosphatase domain signature. 121 129 IPR000222 GO:0043169
Lja4g1841 377 SMART PP2C_4 72 342 IPR001932 -
Lja4g1841 377 PANTHER PROTEIN PHOSPHATASE 2C 1 365 IPR015655 GO:0004722|GO:0006470
Lja4g1841 377 Gene3D - 60 347 IPR036457 -
Lja4g1841 377 CDD PP2Cc 82 344 IPR001932 -
Lja4g1841 377 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 365 - -
Lja4g1841 377 SUPERFAMILY PP2C-like 70 345 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1841 Lja-Chr4 18005089 18008702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1841 63 377 PP2C-type Phosphatase Gene Family AT2G25620 58.385 3.88e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Lja4g1841 PP2C 5.7e-67 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1841 K14803 - gmx:100782648 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1841 4 18005089 18008702 Lja4g1841 4 18005089 18008702 ECH
Lja4g1841 4 18005089 18008702 Lja6g1846 6 45800677 45803560 PCT