Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1838 ATGGGTTCTTCTTCTAGTCGTCTCGGGTCTCGCTCTTCTCCTCCTCGGGTCAACAACAACCGCTTCAGACTATCCTCTCTTCTCTGTGGATCCTCCGCTTCCCGCTCTACAACTCCTCAGATGGAAGAACGTCCATCTGAGCTTCAGGTTGGTTCGGCAAGAGATTTTGATGATGAAATTCAGAAAGCAGCCTCTGAGGAATCGTCTTTATCATGTACAGAAGCTAGAACTAGCTATTGTCCCCGTGCTGAAACTTCAACCTCATCTGATATGGGAGTTGAGTTCTGTGGTGATAAAACCGTTGAAGGTTCTTCCAGAAATGTTGCAGCAAATAGTCAGAGGAAGTGTTTGTCTGAACGTCAGGAGCTAGTTCCTCCTTATCAGGTAAGCGCCGATAATAGTCGTCATGAATCATATAGTGATAGTAGCAACACAGCTAGTACTTCATCTGTTGAACATCAGTCTTCAGATCCAGTTTCTATAAGTGTTTCTGCTAACAAGGATGCAGTCAATAATGTTGATGATCCAGTGTTTAGTGGTATCTGTCAAACCTCTCGTGACACGATGTATCCAAGGAGTTCAACCCCTCAAGAGCGTGGAAATACCAGTTCTGATGAAATTTCTGTTGAGAATCACACTGGTGCATTCACATCTATCCAGAGTGCTCCTTCCAATCCTGTTGCTCAAGTTTCCAATATAATGGCAATTTCTCAAGTGCCAGAAGATGAACCTCTTCGCGAGGCAATACCTTCAGGTTTAGGTTTTCTTGTGTCCAATCGGGAAACAGGGCAGGGAGATGATAGCGTGATTCAAGTTGACGTGGTCACAATATCTTCCAACATTTTGTCAGCAAGCAATGCAGATGCCAATGATCATGATTCCAGAAGAAATGGTAGAAGATTATTTTGGGATGCTTTTTCACGACGTAGCTCTGGAAGGCTTGGTGATTCTCCGACCATTGTCTTCTCCAGTGGAGGTGCTGATGATACAGGATCTCAAGATCGATGGCTCATTGATTTTAGCGGTGATTTACCAAATGATAGGGTTGGGGATGATGCTGGAAATCCTGGTCGTAGAACTCATAGATCGAGTGAACGAATGCGGCACCCAAGATCTGAGATTTGGGAAAGGCTTCGTGGTGGCCTTGATGAGATTGGTCGGTTGAATTCTTCATGTCCATTAGGACTCCATGCTGATGGTATGTGCTCATGCGAGTCTTTCCCAATGGCTGAGGAATCTAGCACTCGAGCAAGCATTTCAAGAATAGTCATGCTGGCTGAGGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGGATCACTTTCCCTATCCATGGTCTCACTCCCCGCACCTGAATCAATTGTTGACTCCTTCCCTCTGAAGTCTCACAAAAAGGGCGATGCAGCTAATGGAGACAATGATGCTGAACAATGTCACATATGCCTGGCTGAGTATGAAGAAGGGGACCAAATACGAGTTCTTCCTTGCAACCATGAGTACCACAAGTTGTGTGTTGACAAGTGGCTTAAGGAAATACATGGTGTGTGCCCTCTTTGTCGTGGCAATGTTTGTGGAGAGTTGTCTGCTACCTACTCAGTAGTGCAGTCTCAATGA 1620 0.4525 MGSSSSRLGSRSSPPRVNNNRFRLSSLLCGSSASRSTTPQMEERPSELQVGSARDFDDEIQKAASEESSLSCTEARTSYCPRAETSTSSDMGVEFCGDKTVEGSSRNVAANSQRKCLSERQELVPPYQVSADNSRHESYSDSSNTASTSSVEHQSSDPVSISVSANKDAVNNVDDPVFSGICQTSRDTMYPRSSTPQERGNTSSDEISVENHTGAFTSIQSAPSNPVAQVSNIMAISQVPEDEPLREAIPSGLGFLVSNRETGQGDDSVIQVDVVTISSNILSASNADANDHDSRRNGRRLFWDAFSRRSSGRLGDSPTIVFSSGGADDTGSQDRWLIDFSGDLPNDRVGDDAGNPGRRTHRSSERMRHPRSEIWERLRGGLDEIGRLNSSCPLGLHADGMCSCESFPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKGDAANGDNDAEQCHICLAEYEEGDQIRVLPCNHEYHKLCVDKWLKEIHGVCPLCRGNVCGELSATYSVVQSQ* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1838 539 MobiDBLite consensus disorder prediction 48 64 - -
Lja4g1838 539 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 536 - -
Lja4g1838 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 526 IPR013083 -
Lja4g1838 539 Pfam Ring finger domain 479 522 IPR001841 -
Lja4g1838 539 MobiDBLite consensus disorder prediction 352 370 - -
Lja4g1838 539 SMART ring_2 480 521 IPR001841 -
Lja4g1838 539 MobiDBLite consensus disorder prediction 345 370 - -
Lja4g1838 539 CDD mRING-H2-C3H2C2D_ZSWM2 479 522 - -
Lja4g1838 539 MobiDBLite consensus disorder prediction 117 159 - -
Lja4g1838 539 MobiDBLite consensus disorder prediction 1 92 - -
Lja4g1838 539 MobiDBLite consensus disorder prediction 176 205 - -
Lja4g1838 539 MobiDBLite consensus disorder prediction 65 92 - -
Lja4g1838 539 MobiDBLite consensus disorder prediction 1 45 - -
Lja4g1838 539 MobiDBLite consensus disorder prediction 177 205 - -
Lja4g1838 539 SUPERFAMILY RING/U-box 474 525 - -
Lja4g1838 539 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 536 - -
Lja4g1838 539 MobiDBLite consensus disorder prediction 127 159 - -
Lja4g1838 539 ProSiteProfiles Zinc finger RING-type profile. 480 522 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1838 Lja-Chr4 17968257 17972837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1838 391 526 C3H Transcription Factor Family AT5G45290 52.980 6.68e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1838 - - gmx:100783604 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1838 4 17968257 17972837 Lja4g1838 4 17968257 17972837 ECH