Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1831 ATGGCTTTCCACGACCATCATCTCCAGCACGAAATCGCGTTCCAGCGTTTCGCGGAGGAGCAAGAGCTATCAGAGAACAGGGACATGCCGCCGCCGCAGCCGACGTGGCTGAACGCTCAGCAGCGGCAGCAGAATTTCATGCACCTGCAACCGGAGACTTCGACGGCGGAGAAGAGCGGTGGTGGTGGTGAGGATTTGAGGGAGTACAAAGCTGACATCCTCGGACACCAGCTTTACGAGCAGCTGTTATCTGCTCACGTTTCTTGCCTGAGAATTGCGACGCCGGTGGACCAGCTTCCGAGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTGCTGGAGAAGTACTCTGCTCTTGGGAGTAATCATAGAGTGGTGGATGAGAAGGAGCTTGATCAGTTCATGACGCATTACGTTCTGTTGCTGTGTGCCTTCAAAGAACAATTGCAACAACATGTCCGTGTTCATGCTATGGAAGCAGTGATGGCTTGTTGGGATCTCGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTCCAGGTGAAGGAACAGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAGCAATGCCAACTTGTACGAAAGCAGCATGGACGGTGCTGACAGTCTTGGCTTTGGTCCTCTAGTCCCCACTGAGAGTGAAAGGTCTTTGATGGAGCGAGTCAGGCATGAGTTAAAGCATGAGCTCAAACAGGGATACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGGCGAGCCGGGAAGCTCCCAGGGGACACCACATCTCTTTTGAAAGCTTGGTGGCAAGCACATTCAAAATGGCCCTACCCTACTGAGGAAGACAAAGCTAGATTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCATCAGCTACTAGCACCAAAACCAAGCGCAAGAGTGCAGGCGAAACCAGTAACCAGAGCTTCATGTGA 1023 0.5112 MAFHDHHLQHEIAFQRFAEEQELSENRDMPPPQPTWLNAQQRQQNFMHLQPETSTAEKSGGGGEDLREYKADILGHQLYEQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLEKYSALGSNHRVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYESSMDGADSLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSATSTKTKRKSAGETSNQSFM* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1831 340 SMART KNOX1_2 67 111 IPR005540 GO:0003677|GO:0005634
Lja4g1831 340 ProSiteProfiles 'Homeobox' domain profile. 253 316 IPR001356 GO:0003677
Lja4g1831 340 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 26 334 - -
Lja4g1831 340 SMART KNOX2_2 120 176 IPR005541 GO:0003677|GO:0005634
Lja4g1831 340 ProSiteProfiles ELK domain profile. 233 253 IPR005539 GO:0003677
Lja4g1831 340 SUPERFAMILY Homeodomain-like 255 319 IPR009057 -
Lja4g1831 340 Pfam KNOX2 domain 125 175 IPR005541 GO:0003677|GO:0005634
Lja4g1831 340 MobiDBLite consensus disorder prediction 310 340 - -
Lja4g1831 340 SMART ELK_2 233 254 IPR005539 GO:0003677
Lja4g1831 340 SMART HOX_1 255 320 IPR001356 GO:0003677
Lja4g1831 340 Pfam Homeobox KN domain 273 312 IPR008422 GO:0003677|GO:0006355
Lja4g1831 340 Pfam ELK domain 233 254 IPR005539 GO:0003677
Lja4g1831 340 MobiDBLite consensus disorder prediction 176 196 - -
Lja4g1831 340 Gene3D - 254 315 - -
Lja4g1831 340 CDD homeodomain 256 317 IPR001356 GO:0003677
Lja4g1831 340 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 26 334 - -
Lja4g1831 340 Pfam KNOX1 domain 69 110 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1831 Lja-Chr4 17853563 17860768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1831 69 329 Homeobox Transcription Factor Family AT5G25220 84.030 2.62e-163 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lja4g1831 KNOX2 4.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1831 - - gmx:100781997 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1831 4 17853563 17860768 Lja4g1831 4 17853563 17860768 ECH
Lja4g1831 4 17853563 17860768 Lja6g1839 6 45741987 45746233 PCT