Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1825 ATGCCGTGCGGCGAGTCCTCCGCCGCCGGTGCCGGCCGACCACCCACGGACCCCTCTTCCGGCGTCTCCGATCAAGTCGACATCACTCACGACGACTCCGTGAAGAAAGACCCTAGGGAATATGCTAGAAAGTATCAGTTGGAGCTGTGCAAAAAAGCTTTGGAGGAAAATATAATTGTGTATTTGGGGACAGGATGTGGTAAAACCCACATTGCTGTGCTGCTTATGCACGAGATGGGTCATTTGATACGGAAGCCCGCGGAGAAAGTCTGTGTTTTTCTTGCCCCTACTGTGGCTTTAGTTCAACAGCAAGCCAAGGTGATAGAAGACTCTACTGATTTTAAGGTTGGAATTTACTGTGGGAGTTCCAAGCGCTTGAAAAATCCTCAAGAGTGGGAGCTGGAGATTGGGCAGTATGAGGTTCTTGTCATGACCCCACAAATATTACATCGCAACTTATCTCATTGTTTCATCAAGATGGAGATGATTGCACTTTTGATATTTGATGAGTGTCATCATGCTCAAATCAAAAGCAACCATCCTTATGCACAAATCATGAAAGTCTTCTACGAAAAGAATTCCACAAAGGTTCCCCGTATATTTGGCATGACTGCTTCCCCTATCGTAGGAAAAGGTGCTTCTATCAAATCAAATCTACCAAAAAGCATCAACAGTCTTGAACATATGCTTGATGCTAAGGTTTATTCAGTTAAGGATAAGGAATTGCAAACTTTTGTGACCACTCCTGTAATTCATGTATATCCTTACGATTCTACTTCAAAAGTGGAAAGTGGCTTGCACTCAAAAATTGAGGAGATTAAAAGTCAGTGCATAGCAACCCTTGGTAGAAATATAGAAGATCACCAGAAACGGATGAACACTAAGAAACTTCTGAAGCGGATGCATGATAATGTGGTCTTCTGTCTGACGAATCTTGGTATTTGGGGAGCCTTGCAAGCTAGTCGTATTCTTTTGAGCGGTGATCATTCTCAGAGGCATGAATTGGTGGAGGCAGAAGGAAATTCAAGTGATGAGTCTGTGTGTGACAAATATCTTGCTCTGACAGCTGAACTATTTACTTCACAATGCATGATTGGTGACAGTGTATCTGACCAATGTTCTGTGGAAATATTAAAAGAGCCCTTTTTCTCAGCAAAGCTTTTACGTCTTATTGGGATACTTTCCAATTCTAGGTTGCAACAAGACAGGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCAAGATCCCTGTCATACATACTGCAGAAGCTCAAGCTTCTACGACAATGGAAGAGTGATTATCTAGTAGGAGTACATTCTGGACTGAAGAGTATGTCCCGAAAGACCATGAACGTCATTGTTGAGAAGTTTCGCTCTGGAGAGTTGAATCTATTGGTTGCCACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTTGTCATACGATTTGATCTTCCAGAAACTGTTGCTAGCTTTATACAGTCAAGAGGCCGTGCACGTATGGCTCAGTCAGAATATGCATTTTTGGTGGACAGTGACAACAAGAAGGAATTGGACATAATTGACGGTTTTGAGAAAGATGAGTACCAAATGAATACGGAAATTACTGTCCGCACATCCAATGAGACATACAACATCCCCGAGGAAAGAATATTCCGAGTTGATTCATCTGGTGCTTCTGTCAGTTCAGGATATAGCATCTCATTGCTTCACCAATACTGTTCAAAGCTTCCACATGATGAGTTCTTTGACCCCAAGCCAAATTTCTTTTACTTCGAGGATTCAGGGGGAATTGTCTGCCACATAATTTTGCCTTCCAATGCTCCAATACACCAAGTTGCCAGCACACCACAGTTGTCAATGGAAGCTTCAAAAAGGGATGCTTGCCTGAATGCAATAGAAGAACTGCATAAACTGGGTGCTTTAAATGATTCTCTCTTGCCAAAGCAAGATCATGCAGAGCCTGAGGAGCAGGTTTTGGGCTCTTCTGATTTAGATGAGTGTGAAGATGACATATCAAGAGGAGAATTATATGAGATGCTAGTTCCGCCTGTTTTTGGACAGTCATGGATAAATGAGGAGAAAATTGTTCATCTCAATTCTTACTACATCAAATTTTGTCCCTGTCCAAACGATAGGGACTACAAAAAGTTTGGGTTATTCATCATGGCTCGTCTTCCACTGGAGGCTGAGAAACTAGAACTTGATCTACATCTTGCTCATAGTAGATATGTGAAGACAAAGGTTATTCCATTTGGAGTTTTAGAATTCCACAAAGATGAGATTAAAATGGCGGAGAATTTTCAAGAAATGTTCCTCAAAATGATTCTTGATAGATTAGAATTTGCTTCTGAGTTTGTAGACTTGGTTAAGGGTGCTGAAGCTCAGACAAGCATGCCGACCTTCTACCTTTTGCTTCCAGTCATATTGCAAGAATATGATAATGTCATGAAAGTAGATTGGAAGACAGTGAAGCAATGCCTTAGTTCACCAATTTTCAGGCATCCAGTAGATACTGTGGATAAAAAAAAAGATTTCCCTTCGGACATCCAGCTGCAACTTGGCAATGGTTACAGAAGTGTTAGAGATGTTGAGAATAGTTTAGTGTATGTCCCACATAAGAAGCTCTTTTATTTTGTCACAAATATCGACTATCTAAAGAACGGGTTCAGTCCTTATAATAAAGATTCAAGCTATGTGGACCACTTCATTGAAAAGTCGATTAATCTCAAATGCCCTGAACAACCACTTCTGCATGTAAAACCACTCTGTAATTTGCACAACCTGCTACACAACCGAAAGCGTGAGGATACAGAAGCGCATGAGCTGGAGGAATATCTAGTTTATTTTCCTCCTGAGTTATGTGAGCTTAAAATAGTTGGCTTCTCAAAGGACATTGGTAGTTCCATATCTTTGCTGCCCTCATTTATGCACCGGCTTGGAAACTTGCTAGTTGCTATTGAACTCAAGCACATGCTATCTTCTTTCTTCCCAGAGGCAGCTAAAATAAATTCTCTTAAAGTTCTAGAGGCTCTCACCACTGAGAAGTGTCAGGAGTGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGACTCTTTCCTTAAATTTGCTGTTGCACGTCATTTTTTTCTCATGCATGAAAACCTTCATGAAGGAGACCTAACAAGAAGCCGATCCAATCTTGTAAAAAATTCCAATTTGTTTAAGTTGGCTATTAGGCGCAATTTGCAGGTCTATATATGCGATTACGCATTTAATCCCTTGCAGTTCTATGCACTAGGCCGTCCTTGCCCAAGAATTTGTAGCAAGGAAACTGAAGAAAGCATACACTTCTGTTTCGACTCTGTTAAGAACCAAAATAGAGCAACTGAAGCCCGATGTAATAAAAATCATCATTGGTTGCACAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTCGGAGCATTCCTAGTTGAGAGTGGCTTTAAAGCTGCAATTGCCTTTCTTCAATGGATTGGCATACAAGTTGATTTTGAAGCGTCACAAGTTGTTAATATTTGCAGAGGAAGTGCTAGATATTTTCCTCTTTCTGCTGATGTAGACATTCCTTCCCTTGAACATAACTTAGGACATCACTTTGTCCATAAGGGACTGCTTCTCCAGGCATTCATTCATCCATCTTACAGTAAGCATGGAGGAGGCTGTTATCAACGATTGGAGTTTCTAGGAGATGCTGTCATGGACTACTTAATTACTTCGTATCTATATTCAGCATATCCCAAGCTAAAGCCTGGTCAATTGACAGATTTGAGATCGCTGTCTGTTAATAATAAGGCATTTGCCTGTGTAGCAGTAGACCGCAGATTTGATAAATTTATTTTATGTGATTCAAGCGGCCTGTCTGAGGCAATTAAAAATTATGTGGACTATATTAGAAGATCTGTATCATGCAGTTGCGTTAAGGAAGGTCCAAAATGTCCCAAGGCCCTGGGCGACATAGTGGAATCTGGTCTTGGTGCCATTCTTCTTGACTCCGGATTCAATTTGAACAAAGTTTGGGAGATTATGACTTCATTCGTGGACCCAATCATGAAATTCTCTTCAAGCTTTCAGCTTAGTCCAATGAGGGATTTGCGAGAACTTAGCCAGTCGTATAATTTGGAATTGGAGTTTCTGCCAACAAAACTGAGTAAAACTTTTTCAGTTGAAGCCAGAGTGACTGGTAATGGTTTATGCGAATCAGCTTCAGCCATCAGCCAAAGTAAAAAAGAGGCTTCTAGAATTGCTTCACAGCGACTATTTTCAAACTTAAAGGCTCGAGGCTGGAAAACAAAGTCAAAAACTTTGGAAGAAGTTATGAAATCAACCGATAAGACGGAACCGCAACTTATTGGCTATGATGAAACTCCCATTGATGTAACAGATACCAATTCCATGGGACACATAATGGTTCAAAGAGACCTAGGCAGCAAGTCTGACCCAGAAATTCGCCCTATCCTTGAGGTAGTTGATACATACTCCCCATGTGTGACACCTGTTGGAGAACTGCTTCCATCTTCTCCCGAAGGAAAGCTTAATGAAACCTTTAAAAATCAAGAATGTAGCGGTGATTTGTTGAGGACAGCAACAGCAACATCACGATTGTATGAAGTCTGTGCTGCTTATGGCTGGAAACCTCCTTCATTTGAATGCTGCAAGGAAGAAGGACCAGACCATCAGAAGATATTCACTATCAAGGTGACATTGGAGATAGAAGAGATCCCAGATATGATTTTTGAGTTTGTTGGGGAACCTCTACTAAAGAAGAAAGATGCAGCAAAGAGTGCAGCTGAGGGTGCCCTTTGGTACCTGCAACAGAAAGGTTACCTGCCTAATACTACTGGTAATTGA 4884 0.4115 MPCGESSAAGAGRPPTDPSSGVSDQVDITHDDSVKKDPREYARKYQLELCKKALEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPAEKVCVFLAPTVALVQQQAKVIEDSTDFKVGIYCGSSKRLKNPQEWELEIGQYEVLVMTPQILHRNLSHCFIKMEMIALLIFDECHHAQIKSNHPYAQIMKVFYEKNSTKVPRIFGMTASPIVGKGASIKSNLPKSINSLEHMLDAKVYSVKDKELQTFVTTPVIHVYPYDSTSKVESGLHSKIEEIKSQCIATLGRNIEDHQKRMNTKKLLKRMHDNVVFCLTNLGIWGALQASRILLSGDHSQRHELVEAEGNSSDESVCDKYLALTAELFTSQCMIGDSVSDQCSVEILKEPFFSAKLLRLIGILSNSRLQQDRKCIIFVNRIVTARSLSYILQKLKLLRQWKSDYLVGVHSGLKSMSRKTMNVIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMAQSEYAFLVDSDNKKELDIIDGFEKDEYQMNTEITVRTSNETYNIPEERIFRVDSSGASVSSGYSISLLHQYCSKLPHDEFFDPKPNFFYFEDSGGIVCHIILPSNAPIHQVASTPQLSMEASKRDACLNAIEELHKLGALNDSLLPKQDHAEPEEQVLGSSDLDECEDDISRGELYEMLVPPVFGQSWINEEKIVHLNSYYIKFCPCPNDRDYKKFGLFIMARLPLEAEKLELDLHLAHSRYVKTKVIPFGVLEFHKDEIKMAENFQEMFLKMILDRLEFASEFVDLVKGAEAQTSMPTFYLLLPVILQEYDNVMKVDWKTVKQCLSSPIFRHPVDTVDKKKDFPSDIQLQLGNGYRSVRDVENSLVYVPHKKLFYFVTNIDYLKNGFSPYNKDSSYVDHFIEKSINLKCPEQPLLHVKPLCNLHNLLHNRKREDTEAHELEEYLVYFPPELCELKIVGFSKDIGSSISLLPSFMHRLGNLLVAIELKHMLSSFFPEAAKINSLKVLEALTTEKCQECFSLERLEVLGDSFLKFAVARHFFLMHENLHEGDLTRSRSNLVKNSNLFKLAIRRNLQVYICDYAFNPLQFYALGRPCPRICSKETEESIHFCFDSVKNQNRATEARCNKNHHWLHRKTIADVVEALVGAFLVESGFKAAIAFLQWIGIQVDFEASQVVNICRGSARYFPLSADVDIPSLEHNLGHHFVHKGLLLQAFIHPSYSKHGGGCYQRLEFLGDAVMDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRRFDKFILCDSSGLSEAIKNYVDYIRRSVSCSCVKEGPKCPKALGDIVESGLGAILLDSGFNLNKVWEIMTSFVDPIMKFSSSFQLSPMRDLRELSQSYNLELEFLPTKLSKTFSVEARVTGNGLCESASAISQSKKEASRIASQRLFSNLKARGWKTKSKTLEEVMKSTDKTEPQLIGYDETPIDVTDTNSMGHIMVQRDLGSKSDPEIRPILEVVDTYSPCVTPVGELLPSSPEGKLNETFKNQECSGDLLRTATATSRLYEVCAAYGWKPPSFECCKEEGPDHQKIFTIKVTLEIEEIPDMIFEFVGEPLLKKKDAAKSAAEGALWYLQQKGYLPNTTGN* 1628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1825 1627 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1542 1616 - -
Lja4g1825 1627 SMART helicmild6 416 506 IPR001650 -
Lja4g1825 1627 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1371 1437 IPR014720 -
Lja4g1825 1627 SMART DRBM_3 1542 1616 IPR014720 -
Lja4g1825 1627 SMART DRBM_3 1372 1436 IPR014720 -
Lja4g1825 1627 MobiDBLite consensus disorder prediction 1 33 - -
Lja4g1825 1627 Pfam Helicase conserved C-terminal domain 386 504 IPR001650 -
Lja4g1825 1627 Pfam Dicer dimerisation domain 570 654 - -
Lja4g1825 1627 SMART PAZ_2_a_3 845 989 IPR003100 GO:0005515
Lja4g1825 1627 Pfam Ribonuclease III domain 1028 1159 IPR000999 GO:0004525|GO:0006396
Lja4g1825 1627 Pfam Ribonuclease III domain 1235 1344 IPR000999 GO:0004525|GO:0006396
Lja4g1825 1627 ProSiteProfiles PAZ domain profile. 894 963 IPR003100 GO:0005515
Lja4g1825 1627 Gene3D Dicer dimerisation domain 566 661 IPR038248 -
Lja4g1825 1627 SUPERFAMILY RNase III domain-like 1012 1173 IPR036389 GO:0004525|GO:0006396
Lja4g1825 1627 CDD RIBOc 1013 1169 IPR000999 GO:0004525|GO:0006396
Lja4g1825 1627 ProSiteProfiles Ribonuclease III family domain profile. 977 1159 IPR000999 GO:0004525|GO:0006396
Lja4g1825 1627 Pfam PAZ domain 866 984 IPR003100 GO:0005515
Lja4g1825 1627 Gene3D - 379 541 IPR027417 -
Lja4g1825 1627 PANTHER DICER-LIKE PROTEIN 4 38 1619 - -
Lja4g1825 1627 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 225 IPR014001 -
Lja4g1825 1627 SUPERFAMILY dsRNA-binding domain-like 1541 1622 - -
Lja4g1825 1627 Gene3D - 41 304 IPR027417 -
Lja4g1825 1627 CDD RIBOc 1216 1366 IPR000999 GO:0004525|GO:0006396
Lja4g1825 1627 Gene3D Ribonuclease III domain 1196 1366 IPR036389 GO:0004525|GO:0006396
Lja4g1825 1627 Gene3D Ribonuclease III domain 1006 1170 IPR036389 GO:0004525|GO:0006396
Lja4g1825 1627 Pfam Type III restriction enzyme, res subunit 50 207 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lja4g1825 1627 CDD DEXHc_dicer 42 239 - -
Lja4g1825 1627 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 570 660 IPR005034 GO:0016891
Lja4g1825 1627 PANTHER DICER-RELATED 38 1619 - -
Lja4g1825 1627 SMART ultradead3 38 243 IPR014001 -
Lja4g1825 1627 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1541 1617 IPR014720 -
Lja4g1825 1627 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 543 IPR001650 -
Lja4g1825 1627 SUPERFAMILY RNase III domain-like 1199 1363 IPR036389 GO:0004525|GO:0006396
Lja4g1825 1627 Gene3D - 1548 1617 - -
Lja4g1825 1627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 520 IPR027417 -
Lja4g1825 1627 ProSiteProfiles Ribonuclease III family domain profile. 1200 1344 IPR000999 GO:0004525|GO:0006396
Lja4g1825 1627 Gene3D paz domain 859 971 - -
Lja4g1825 1627 ProSitePatterns Ribonuclease III family signature. 1235 1243 IPR000999 GO:0004525|GO:0006396
Lja4g1825 1627 SUPERFAMILY PAZ domain 865 961 IPR036085 GO:0005515
Lja4g1825 1627 SMART riboneu5 1215 1367 IPR000999 GO:0004525|GO:0006396
Lja4g1825 1627 SMART riboneu5 1010 1179 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1825 Lja-Chr4 17709596 17739858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1825 404 524 Eukaryotic Initiation Factors Gene Family AT1G72730 29.839 4.74e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1825 K11592 - gmx:100818702 2573.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1825 4 17709596 17739858 Lja4g1825 4 17709596 17739858 ECH