Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1824 ATGTCAGGGTGGGACGAAGGAGGCGTGTACTACAGCGACCAAGCGCACTCATGGGACGACGCCGGCCGCACCGAATCGGAAGCCGGCGCCTCCAATCACTCCCTCCTCCAGAAGTTCAAGGAATTCATCCGAAACTTCGAAACCGGCAACAACTACTTCCCTTACAGAGAGAGCCTCCTCAAGGACCCTAGCTTCCTCCTCGTCGATTTCGAAGATCTCGGCACCTTCGATGATGCCCTTCCCGGCAAGCTCCGCGCTAACCCCGCCGATTTCTTGCCCCTGTTCGAGACGGCGGCGGCGCAGGTTCTGGTGAGTTTGAAGACCAAGGTGCCTGGGGATACCGGAGAAATGGAGGATCCGGCGCCTAGGGATGTTCAGGTTCTCCTCACCTCCAAGGAGGATCCAGTGCCTATGAGATCGCTAGGGGCTCAATACATATCGAAGCTTGTTAAAATTGCTGGGATTACTATTGCTGCGTCGAGGACGAAGGCAAAGGCAACTTATGTCACCCTGATATGTAAGAACTGCAGGAATGTGAAGCAAGTTCCGTGTAGGCCTGGACTTGGGGGAGCAATTGTTCCTCGTTCCTGTGATCACGCTCCTCAGCCTGGAGAAGAACCTTGCCCAATTGATCCGTGGCTTGTAGTTCCTGACAAAAGCAAGTACGTTGATCAACAAACATTGAAGCTGCAAGAAAATCCGGAGGATGTTCCAACTGGAGAACTCCCTAGAAACCTGCTTCTCTCTGTAGATCGTCAACTTGTTCAAAAAGTAGTACCAGGCTCAAGATTGACAATCATTGGAATCTATAGTATCTACCAGGCTTCCAACTCTTCTACATCCCAAAAAGGAGCCGTTGCAATTAGACAGCCTTACATTAGGGTCGTAGGAATGGAGGATGAAAATGATGCCAAGTCCCGAGGACCAGATATTACAGAAAAAGAGAAAGAAGAATTCAGAAAGTTTGCAGCTCGCCCTGATGCATATGAAGCAATATGTAAAAAGGTTGCTCCATCTATATTTGGACATCAGGATATAAAAAAGGCTGTGGCCTGTCTTCTATTTGGAGGATCGAGAAAGAATTTGCCAGATGGAGTGAAATTAAGAGGTGATATTAATGTGTTGCTTCTGGGGGATCCGTCTACAGCAAAGTCACAGTTTCTCAAGTTTGTTGAAAAGACAGCTCCTATTGCTGTTTATACTTCTGGGAAAGGGTCTTCAGCTGCTGGGCTCACAGCTTCTGTAATTCAAGATAGCAGCACTCGCGAGTTTTATCTTGAAGGAGGAGCTATGGTCTTGGCTGATGGAGGTGTGGTCTGCATCGATGAGTTTGACAAGATGAGACCAGAAGATAGAGTTGCCATTCATGAAGCCATGGAACAGCAAACTATATCCATAGCCAAAGCAGGAATAACAACTGTTCTTAATTCAAGAACTTCTGTTCTTGCTGCTGCCAACCCTCCTTCAGGACGTTATGACGATCTCAAGACTGCACAGGACAACATTGATTTACAGACCACTATTCTTTCTAGATTTGATTTAATCTTCATTGTGAAGGACATCAGGTCGTACGACCAAGATAAGGAAATAGCTGGTCATATCATTAAGATTCATTCAGATGCTTCTGGTGTAACAATGGGTGAGAGTAATGTTTCCAAAGAAGAGAATTGGCTGAAGAGGTATTTGCAATATTGTCGAAGAGAGTGCCACCCTCGTCTATCGGAATCTGCAGCAGAATCACTGCAGACTGACTATGTAAAAATCAGACAGGATATGAGGCAGCAAGCAAATGAAACTGGAGAAGCTGCTGCAATACCAATTACTGTAAGGCAGCTGGAAGCTATTGTTAGGCTGAGTGAGGCACTTGCAAAGATGAAACTATCTAATGTCGCAACTGAGGAGCATGTGAAAGAAGCAACAAGGCTTTTCACTGTGGCTACGATGGACGCAGCTAAGTCAGGAATAAACCAACAAATTAATCTTACACCTGAAATGGCGAATGAGATAAAGCAAGCCGAAACCCAGATAAAGAGAAGACTTGGGATTGGAAACCACATATCAGAAAGAAGGCTGATTGATGACCTCGGAAGAATGGGAATGAATGAATCTATTGTGAGAAGAGCCCTTGTTATCATGCACCAGAGAGACGAAGTAGAGTACAAGCGAGAAAGGCGTGTTGTATTCAGGAAAGCATAA 2196 0.4604 MSGWDEGGVYYSDQAHSWDDAGRTESEAGASNHSLLQKFKEFIRNFETGNNYFPYRESLLKDPSFLLVDFEDLGTFDDALPGKLRANPADFLPLFETAAAQVLVSLKTKVPGDTGEMEDPAPRDVQVLLTSKEDPVPMRSLGAQYISKLVKIAGITIAASRTKAKATYVTLICKNCRNVKQVPCRPGLGGAIVPRSCDHAPQPGEEPCPIDPWLVVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRQLVQKVVPGSRLTIIGIYSIYQASNSSTSQKGAVAIRQPYIRVVGMEDENDAKSRGPDITEKEKEEFRKFAARPDAYEAICKKVAPSIFGHQDIKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIQDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRSYDQDKEIAGHIIKIHSDASGVTMGESNVSKEENWLKRYLQYCRRECHPRLSESAAESLQTDYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSNVATEEHVKEATRLFTVATMDAAKSGINQQINLTPEMANEIKQAETQIKRRLGIGNHISERRLIDDLGRMGMNESIVRRALVIMHQRDEVEYKRERRVVFRKA* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1824 731 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 493 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g1824 731 PRINTS Mini-chromosome maintenance (MCM) protein family signature 369 384 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g1824 731 PRINTS Mini-chromosome maintenance (MCM) protein family signature 457 470 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g1824 731 PRINTS Mini-chromosome maintenance (MCM) protein family signature 508 516 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g1824 731 PRINTS Mini-chromosome maintenance (MCM) protein family signature 429 443 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g1824 731 Gene3D - 309 666 IPR027417 -
Lja4g1824 731 SMART mcm 134 648 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja4g1824 731 Gene3D - 165 223 - -
Lja4g1824 731 SUPERFAMILY Nucleic acid-binding proteins 38 295 IPR012340 -
Lja4g1824 731 Gene3D - 27 115 - -
Lja4g1824 731 Pfam MCM P-loop domain 316 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g1824 731 Pfam MCM N-terminal domain 37 127 IPR027925 -
Lja4g1824 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 644 IPR027417 -
Lja4g1824 731 ProSiteProfiles MCM family domain profile. 328 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja4g1824 731 Coils Coil 578 598 - -
Lja4g1824 731 ProSitePatterns MCM family signature. 437 445 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lja4g1824 731 PANTHER DNA REPLICATION LICENSING FACTOR MCM5 64 677 - -
Lja4g1824 731 Pfam MCM OB domain 138 273 IPR033762 -
Lja4g1824 731 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 139 154 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lja4g1824 731 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 165 177 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lja4g1824 731 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 641 658 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lja4g1824 731 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 289 301 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lja4g1824 731 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 565 580 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lja4g1824 731 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 64 677 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja4g1824 731 CDD MCM5 332 645 - -
Lja4g1824 731 Pfam MCM AAA-lid domain 557 645 IPR041562 -
Lja4g1824 731 Gene3D - 138 273 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1824 Lja-Chr4 17702767 17708064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1824 1 731 Core DNA Replication Machinery Family AT2G07690 75.683 0.0 1141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1824 K02209 - gmx:100779483 1234.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1824 4 17702767 17708064 Lja4g1824 4 17702767 17708064 ECH