Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1818 ATGCAAGTTAAATCTAAAATAAAAGTAAACTTGGATTGGGTGCATTTTCTGGCTTATGATTACTATGTTCCTAGAAAGCACAATGTAACCGGCAATCAGGGCAAAAGTTTCTTATGCAAAGGAAAATGGTCTACTTGGTTACAATTATTCAGTTATCTCACAATCAAATTGGCAACAGATAAATTTTCAAAAAATAATAAGCTTGGAGAGGGTGGATTTGGCTCTGTGTACAAGGGGAAATTACAGAATGGACAGGAAATTGCTGTCAAAAGACTCTCAGAAACCTCCAATCAAGGCCTTGAAGAGTTCAGAAATGAGATCACGCTTACAGCAAGACTGCAACATGTAAATTTAGTTAGGCTTCTCGGTTATTGCACAAAAAAGGATGAGATGATTCTGATCAATGAATACCTGCCAAATAAAAGCTTAGATAATTTCCTTTTTGATCCAAGGAAATCAAATCTTTTAGACTGGAACAAGCGTGTCAATATCATTGAAGGGGTTATTCAAGGCCTACTTTATCTCCAGGAGTACTCAAATTTCACCATAATCCACAGAGATATTAAAGCTAGCAATGTTTTGTTAGATCATGAGATGAATCCCAAAATATCAGATTTTGGTATGGCTAGAATTTTCAGGAAATATGACATTGAAGCAAACACAAGCAGGATCGTGGGAACTTATGGGTACGTACCTCCTGAGTATGTCAGAAAAGGCATATACTCAACAAAATACGATGTTTACAGTTTCGGTGTTCTTCTCTTGCAAATCATAAGCGGAAAGAGGACTTCATGTTATTACGGCACGCACGAAAACATGAATCTTTTGGAATATGCGTATGAGCTATGGAGGGAAGGTAGAGGCGTGGAGTTTTTTGACCTGTCATTGGATGATACAACATCACTTTGTAAAATCATGAGATGCATGCAGGTGGCTCTGTTGTGTGTTCAAGATAATTCTGCAGATAGACCTTCCATGTTAGAAGTTGATTCACTCCTTAAGAATGAAGCTGCATCTATTGGTACTCCCAAAACGCCTGGTTTCTCAGTGAAAAAACATGGAGAGGAGGAAGAAACATGTCACAGCGGGGCCAAATTTTCTTCCACCAATGATGTTACAATTTCTGAAATGGCACCAAGATAA 1143 0.3797 MQVKSKIKVNLDWVHFLAYDYYVPRKHNVTGNQGKSFLCKGKWSTWLQLFSYLTIKLATDKFSKNNKLGEGGFGSVYKGKLQNGQEIAVKRLSETSNQGLEEFRNEITLTARLQHVNLVRLLGYCTKKDEMILINEYLPNKSLDNFLFDPRKSNLLDWNKRVNIIEGVIQGLLYLQEYSNFTIIHRDIKASNVLLDHEMNPKISDFGMARIFRKYDIEANTSRIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGTHENMNLLEYAYELWREGRGVEFFDLSLDDTTSLCKIMRCMQVALLCVQDNSADRPSMLEVDSLLKNEAASIGTPKTPGFSVKKHGEEEETCHSGAKFSSTNDVTISEMAPR* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1818 380 Gene3D Phosphorylase Kinase; domain 1 38 137 - -
Lja4g1818 380 ProSiteProfiles Protein kinase domain profile. 62 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1818 380 MobiDBLite consensus disorder prediction 359 380 - -
Lja4g1818 380 SUPERFAMILY Protein kinase-like (PK-like) 43 341 IPR011009 -
Lja4g1818 380 Pfam Protein kinase domain 63 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1818 380 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 46 376 - -
Lja4g1818 380 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524
Lja4g1818 380 MobiDBLite consensus disorder prediction 363 380 - -
Lja4g1818 380 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 46 376 - -
Lja4g1818 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Lja4g1818 380 CDD STKc_IRAK 68 335 - -
Lja4g1818 380 Gene3D Transferase(Phosphotransferase) domain 1 138 343 - -
Lja4g1818 380 SMART serkin_6 62 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1818 Lja-Chr4 17663167 17667599 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1818 50 380 Receptor kinase-like Gene Family AT4G11530 51.039 8.97e-118 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja4g1818 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1818 - - aprc:113847882 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1818 4 17663167 17667599 Lja4g1818 4 17663167 17667599 ECH