Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1803 ATGTCTGCTAGAGCCACCCCCTTCCCTCGGCTCCTCCTTAACAATGTCTCTTGCATGAGAAATGCGCAGCAAATTCTGCGTCATGTGAATGTCTCTCTTCATGATGGAGGAGCCCTCGTGCTAACCGGTGCAAATGGTTCTGGAAAGTCAACTTTCTTGCGCATGTTAGCCGGGTTCTCCCGTCCTTCTGCAGGTGAAATCCTTTGGAATGGCCATAACACTCAAGACTCTGGAATCTTCCATCAGTATAAGCTTCAGCTTAACTGGCTCTCTCTCAAGGATGCCATCGATGGTAGGCTTACAGTTGTTGAAAATGTCCGATGGTTTGAAACTCTGGAAAACAAGTACGGGAAGGCTTTGCCTGCACTTGAGTTGATGGGACTGGGAAGATTGGCCAACGAAAAGCCAAGGATGCTATCTATGGGACAAAGGAAAAGGCTGCAACTTGCAAGATTGCTCGCGATTGATCGCCCCATATGGTTGCTGGATGAGCCTTCAGTTGCATTAGATGATGAAGGTGTGAGGTTACTTGAGTACATTATTGCAGAGCACAGGAAACAAGGAGGCATTGTGATTGTGGCGACTCATTTACCTATTGAGATAGAAGATTCCATGATCTTGAGGCTGCCACCAAGGTTTCCAAGGAGGATGACTTTAGTGGATATGCTTGACCGGTCAGATTATGTTGGTTAG 693 0.4704 MSARATPFPRLLLNNVSCMRNAQQILRHVNVSLHDGGALVLTGANGSGKSTFLRMLAGFSRPSAGEILWNGHNTQDSGIFHQYKLQLNWLSLKDAIDGRLTVVENVRWFETLENKYGKALPALELMGLGRLANEKPRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLEYIIAEHRKQGGIVIVATHLPIEIEDSMILRLPPRFPRRMTLVDMLDRSDYVG* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1803 230 SMART AAA_5 35 223 IPR003593 -
Lja4g1803 230 Pfam ABC transporter 26 166 IPR003439 GO:0005524
Lja4g1803 230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 202 IPR027417 -
Lja4g1803 230 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 9 223 IPR005895 GO:0017004|GO:0022857
Lja4g1803 230 TIGRFAM ccmA: heme ABC exporter, ATP-binding protein CcmA 13 208 IPR005895 GO:0017004|GO:0022857
Lja4g1803 230 Gene3D - 6 208 IPR027417 -
Lja4g1803 230 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 229 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1803 Lja-Chr4 17490258 17490950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1803 24 196 Calmodulin-binding Proteins AT2G36910 26.203 9.30e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1803 - - lja:Lj0g3v0105229.1 452.595