Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1795 ATGGCTGGGAATGGATTGTTTGCAGAGATTTTAGATGGAGAAGTGTTCAAGTACTATGCTGATGGAGAATGGAAGAAATCCACTTCTGGAAAAAGTGTTTCCATCATCAACCCCACTACCAGAAAGACTCAATACAAAGTTCAAGCATGTTCACAAGAGGAGGTTAATAAGGTCATGGATTCAGCAAAATCTGCACAGAAGTCATGGGCCAAGACCCCGCTCTGGAAGCGGGCTGAGCTTCTTCACAAGGCTGCTGCAATCCTCAAAGAGCACAAAGATCCAATTGCAGAGTGCTTGGTGAAAGAAATAGCAAAGCCAGCCAAAGATGCAGTTACAGAGGTTGTAAGATCTGGAGATTTGATTTCTTACACTGCTGAAGAAGGGGTAAGGATTCTGGGAGAGGGAAAGTTCTTGGTGTCGGATAGCTTTCCTGGAAATGAAAGGACGAAATATTGTCTCACATCCAAGATTCCATTGGGTGTAGTTTTAGCCATTCCACCTTTTAACTATCCTGTCAATCTCGCTGTCTCTAAAATCGGTCCTGCGCTGATTGCTGGAAATTCCATTGTTCTCAAGCCTCCAACTCAGGGAGCTGTTTCTGCTCTGCATATGGTTCATTGCTTTCACTTGGCTGGTTTTCCCAAAGGCCTAATCAGCTGTGTTACTGGTAAAGGCTCAGAAATTGGTGACTTTCTTACTATGCATCCTGGAGTGAACTGTATAAGCTTCACCGGTGGAGATACCGGCGTCGCAATTTCAAAAAAGGCAGGCATGATCCCCCTGCAAATGGAGTTGGGAGGAAAAGATGCATGCATTGTTCTTGAGGATGCTGACCTGGATTTGGTTGCTGCTAACATTATAAAGGGTGGTTTTTCATACAGTGGTCAGAGATGCACTGCTGTTAAGGTTGTCCTGGTAATGGAATCTGTTGCTGATGCTTTGGTTGAGAAAGTGAAGGCCAAGGTGGCAAAACTAACTGTTGGACCCCCAGAGAATAACTGTGATATCACCCCAGTTGTGACTGAATCATCAGCCAACTTCATCGAAGGCCTGGTCAATGATGCAAAAGAGAAAGGAGCAACATTCTGCCAGGAATACAAAAGAGAAGGAAATCTTATTTGGCCTTTGCTGCTGGATAATGTTAGGCCAGACATGAGAATTGCATGGGAAGAGCCATTTGGACCTGTTTTGCCAGTGATTAGGATCAACTCTGTTGAAGAAGGGATCCACCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTGTTCACAAAGGATATCAACAAAGCAATGATGATCAGTGATGCAATGGAAACAGGAACAGTTCAGATAAATTCTGCCCCGGCTCGCGGGCCAGATCATTTTCCCTTTCAGGGTATAAAGGACAGTGGGATTGGATCCCAAGGGATTACAAACAGCATAAACATGATGACGAAGGTCAAAACTACTGTGATCAACTTACCTAGCCCTTCTTATTCCATGGTCCTCAAGCATTTTTCGACTCTCCTCGCCTTTCTCTCTCATCTCTGA 1533 0.4449 MAGNGLFAEILDGEVFKYYADGEWKKSTSGKSVSIINPTTRKTQYKVQACSQEEVNKVMDSAKSAQKSWAKTPLWKRAELLHKAAAILKEHKDPIAECLVKEIAKPAKDAVTEVVRSGDLISYTAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIGPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGVAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKAKVAKLTVGPPENNCDITPVVTESSANFIEGLVNDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAMMISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPSPSYSMVLKHFSTLLAFLSHL* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1795 510 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Lja4g1795 510 CDD ALDH_F11_NP-GAPDH 15 487 - -
Lja4g1795 510 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491
Lja4g1795 510 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 1 495 - -
Lja4g1795 510 PANTHER ALDEHYDE DEHYDROGENASE 1 495 - -
Lja4g1795 510 SUPERFAMILY ALDH-like 15 487 IPR016161 GO:0016491
Lja4g1795 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491
Lja4g1795 510 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Lja4g1795 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1795 Lja-Chr4 17395688 17399984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1795 1 495 Aldehyde Dehydrogenase Gene Family AT2G24270 91.111 0.0 945
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1795 K00131 - gmx:100789100 947.962