Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1794 ATGCAGCCGCCACCAGAAATGCAGCAAGACCTTAACTCCCTCTTCGACTCTCCTCAGATCCAAATCAATCATCATGATCTCAACAACTTTCAACCCACTCCTCACGACGATTTCCTCAAGCAAATGCTCTCCACCACCAATCCCTGGTCCCTCGACGCCGCCGACGGTAATGTGGCGGCTGCTTTCCCCTACGACGCTGAACACGCTAACCTCGCCTCCAAGTTCCGTAACCACCAGATCAGTGACAAAGCCCTCATGCTCCTCATGTCAACCGCTGCTAATTCTGGACTCCTCCACATGCCGCCGTCGCTGGGCGGCGCAGGAGGATTTGAGTCCACCCCGAACGACGGCTTCAACGGCTTCACTGGATCGATTCAGGAACAGTCCAACCAGACTCACCATTTTCAACATCCTCAGGGGCAGAGTTTTGGAGCTACGCCGAACCAGGCTCCGGCGGCTGGGAACCCGGGTCCGCCGAAGCAGAGGGTGAGGGCTAGGAGAGGTCAAGCTACCGACCCGCACAGCATCGCAGAGAGGTTACGGAGGGAAAGGATCGCAGAGAGGATGAAGGCTTTGCAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCCTCCATGTTGGATGAGATCATCGATTATGTGAAGTTCCTACAAGTCCAAGTCAAGGTATTGAGCATGAGCAGATTGGGCGGAGCATCGGCCGTCGCTCCACTTGTCGCTGATATGTCCTCCGAGGCAGGAGGAGGCGACTGTAACGGCACTAGGTCCCACCCCCGGAACTCCCAGAAGATGACAGCTTCATCCTCCAACGACAGCCTCACCGTGACGGAGCAGCAGGTGGCCAAGCTCATGGACGAAGACATGGGCTCCGCCATGCAGTACCTCCAGGGAAAAGGTCTCTGCCTCATGCCTATTTCCCTCGCCACCGCAGTCTCCGCCGCCACGTGTCACGCCAGGAACCCTTTGATGAACGCGGGCCACAACATCAACAACAACCCTAGCCCGGTAATTGGATCCAACGGTGATAATGGGCCCTCTTCTCCCGGCATGTCCGCGAACAGCATTGTCAAAGATGCAGCGTCCGTTGGTTGA 1095 0.5671 MQPPPEMQQDLNSLFDSPQIQINHHDLNNFQPTPHDDFLKQMLSTTNPWSLDAADGNVAAAFPYDAEHANLASKFRNHQISDKALMLLMSTAANSGLLHMPPSLGGAGGFESTPNDGFNGFTGSIQEQSNQTHHFQHPQGQSFGATPNQAPAAGNPGPPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGASAVAPLVADMSSEAGGGDCNGTRSHPRNSQKMTASSSNDSLTVTEQQVAKLMDEDMGSAMQYLQGKGLCLMPISLATAVSAATCHARNPLMNAGHNINNNPSPVIGSNGDNGPSSPGMSANSIVKDAASVG* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1794 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 229 IPR036638 GO:0046983
Lja4g1794 364 Pfam Helix-loop-helix DNA-binding domain 174 219 IPR011598 GO:0046983
Lja4g1794 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Lja4g1794 364 MobiDBLite consensus disorder prediction 116 149 - -
Lja4g1794 364 MobiDBLite consensus disorder prediction 116 174 - -
Lja4g1794 364 PANTHER TRANSCRIPTION FACTOR BHLH69 27 326 - -
Lja4g1794 364 MobiDBLite consensus disorder prediction 334 355 - -
Lja4g1794 364 MobiDBLite consensus disorder prediction 248 275 - -
Lja4g1794 364 MobiDBLite consensus disorder prediction 334 364 - -
Lja4g1794 364 SMART finulus 175 224 IPR011598 GO:0046983
Lja4g1794 364 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 326 - -
Lja4g1794 364 Gene3D - 166 233 IPR036638 GO:0046983
Lja4g1794 364 MobiDBLite consensus disorder prediction 255 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1794 Lja-Chr4 17384636 17387807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1794 158 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 72.928 1.30e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g1794 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1794 - - pvu:PHAVU_003G157100g 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1794 4 17384636 17387807 Lja4g1794 4 17384636 17387807 ECH