Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1791 ATGGCTGACAAGAGTTGCAGCAACGAAGCTCACTCTGCTGTGCTTCAAGGCAAGTACGAGCTGGGTCGGGTTCTCGGCCACGGAACATTTGCCAAGGTGTACAACGCGCGGAACCTGAAAACAGGGAAGAACGTGGCCATGAAGGTTATAGGGAAGGAGAAGGTGATCAAAGTAGGGATGATGGAGCAGATAAAGAGAGAAATCTCCGTGATGAAGATGGTGAAGCACCCCAACATCGTCGACCTCCATGAAGTCATGGCCAGCAAGTCCAGGATCTACATCGCCATGGAGCTCGTCCGCGGCGGCGAGCTTTTCAACAAGGTCGCCAAAGGCCGCTTGAAGGAGGATCTCGCTAGAGTTTACTTCCAGCAGCTCATCTCCGCCGTGGACTTCTGTCACAGCCGCGGCGTCTACCACCGCGACCTCAAGCCGGAGAATCTCCTCCTCGATGAAGACGGTAACCTCAAGGTCTCTGACTTCGGCCTCTGCACCTTCTCCGATTTCGGACTGTTACACACCACGTGCGGCACGCCGGCGTATGTCTCGCCGGAGGTGATTGCGAAGAAGGGCTACGACGGCGCCAAGGCGGATATATGGTCTTGTGGGGTCATCCTCTACGTGCTCCTCGCAGGGTTTTTGCCGTTTCAGGATGACAATTTGCTCGCCATGTACAAGAAGATTTACAGAGGAGACTTCAAATGTCCACCATGGTTTTCTTCTGACGCGAGAAGGCTCATCACGAAGCTTCTAGATCCGAACCCGAACAGTAGAATCACGATCTCCAAGATCATGGAATCATCCTGGTTCAAGAAGCCAGTTCCCAAGAGCGTGCAAGCGAGGAAGGAGGAAGAACGGGAAGAGGGGTGGGAGTGTGAGAAGAAGATGAAGGAACCAGCGACGATGAACGCGTTTCATATAATTTCTCTGTCGGAGGGGTTTGATTTGTCGCCGCTGTTTGAGGAGAAGAAGAGGGAGGAGAGGGAGGAGATGAGGTTCGCGACGGCGGGGACGCCGAGCAGGGTGATTTCGAGGCTGGAGGAGGTGGCGAAGGCGGTGAACTTTGATGTTAAAAGTAGTGAAAGCCAAGTGAGGCTTCAGGGGCAGGAGCGTGGGAGGAAGGGGAAGCTGGCGATTGCGGCGGATATTTACGCCGTGACGCCGTCGTTTCTGGTGGTTGAAGTGAAGAAGGATAATGGTGACACCTTGGAGTATAACCAGTTCTGTAGTAAACAGCTTCGGCCTGCGCTCAAAGACATCTTCTGGACTACCCCTGAGAATTCAACACCTGCTTAG 1293 0.5375 MADKSCSNEAHSAVLQGKYELGRVLGHGTFAKVYNARNLKTGKNVAMKVIGKEKVIKVGMMEQIKREISVMKMVKHPNIVDLHEVMASKSRIYIAMELVRGGELFNKVAKGRLKEDLARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEDGNLKVSDFGLCTFSDFGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLLAMYKKIYRGDFKCPPWFSSDARRLITKLLDPNPNSRITISKIMESSWFKKPVPKSVQARKEEEREEGWECEKKMKEPATMNAFHIISLSEGFDLSPLFEEKKREEREEMRFATAGTPSRVISRLEEVAKAVNFDVKSSESQVRLQGQERGRKGKLAIAADIYAVTPSFLVVEVKKDNGDTLEYNQFCSKQLRPALKDIFWTTPENSTPA* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1791 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Lja4g1791 430 CDD CIPK_C 302 417 - -
Lja4g1791 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 10 427 - -
Lja4g1791 430 Pfam Protein kinase domain 19 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1791 430 SUPERFAMILY Protein kinase-like (PK-like) 16 280 IPR011009 -
Lja4g1791 430 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165
Lja4g1791 430 CDD STKc_SnRK3 18 268 - -
Lja4g1791 430 ProSiteProfiles Protein kinase domain profile. 19 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1791 430 Gene3D Transferase(Phosphotransferase) domain 1 101 297 - -
Lja4g1791 430 ProSitePatterns Protein kinases ATP-binding region signature. 25 52 IPR017441 GO:0005524
Lja4g1791 430 PANTHER - 10 427 - -
Lja4g1791 430 SMART serkin_6 19 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1791 430 Pfam NAF domain 298 357 IPR004041 GO:0007165
Lja4g1791 430 Gene3D Kinase associated domain 1, KA1 298 422 - -
Lja4g1791 430 Gene3D Phosphorylase Kinase; domain 1 16 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1791 Lja-Chr4 17350467 17352276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1791 12 430 CBL-interacting serine-threonine protein kinases AT4G30960 72.917 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja4g1791 Pkinase 2.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1791 - K07198 var:108321114 709.138