Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1789 ATGGCTATGCTCCGCAAGCTCTTCTTCCGCAAGCCCCCTGATGGCCTCCTCGAGATCTGTGAAAGAGTTTACGTTTTTGATTGCTGCTTCACAACGGAAGCATGGAATGAAGAGAATTACAAAGTGTACATAGATGGGATAGTTGGTCAGCTTAGGGAGAATTCGCCTGACGCTTCGATTTTGGTTTTCAATTTCCGAGAGGAAGAGACCAAGAGTCAGATGGCGAATATATTGTCTGAGTATGACATTACTATCATGGACTATCCGCGGCACTACGAGGGTTGTCCGGTACTCAAAATGGAGCTGATTCATCACTTTTTGAGGTCGGGCGAGAGCTGGCTCTCGCTTGGGCATCATAATATATTGTTGATGCACTGCGAGAGCGGCGGTTGGCCTGTTTTGGCTTTTATGTTGGCTGCATTGTTGATTTATAGAAAGGTTTATACTGGGGAGCAGAGGACTTTGGATATGGTTTATAGGCAGGCTCCCCACGAGCTTCTGCGTTTGTTGACGCCGTTGTATCCCATTCCTTCTCAGCTGAGGTATTTGCAGTATGTTTCTAGGAGGAATGTGGCATTAGATTGGCCTCCGCTCGACAGGGCGCTCATGTTGGATTGCATCATTCTCAGAATCTTCCCAAGCTTTGACGGCGAAGGTGGTTGTCATCCCATGTTCAGAATTTACGGACAGGATCCTTTTAGCGCAGATAAAAGTCCTAAGATGTTGTACTCAATGCCAAAGAAAAGCAAAAATGTCCGGGCTTACAAGCAGGGAGAGTGTGAACTAATTAAAATTGATATCAATTGCCATATTCAAGGTGATGTCGTGATTGAGACCATTAACTTGAATGGTGACATGGACCGTGAAATGATGATGTTTCGAGTAATGTTCAACACAGCTTTTGTTAGATCTAATATTCTGATGCTTAATCGGGATGAAATTGACATTTTATGGGATGCTAAAGATCACTTTCCAAAAGATTTCAGGGCTGAGATCCTTTTCTCAGAGATGGATGCTGCTGCAGCAGTTATTGCGAATCGCACCTCATGCTTTGAGGAGAAAGAGGGGCTGCCTATTGAAGCATTTGCCAAGGTTCAAGAGATCTTTAACCATGTGGACTGGATGGACCCCAAGGCCGATGCTGCACTAAATGTGCTCCAACAGATAAGTGCTTCGGCTATAATAAATGACAAGGTGGATACAATTTCTGAACAACATGTGGAAACTGGCACTTCATCACATGAAAAAGGTCCTAAAATGCCTCAAGGGAAGTCAAATGAAGCAATGAAGTCTCTATCCTCGAATAAGCAATCTCCAAATAATGATACAAGTAGAAAAGAGGAAAAGACAAATAATGATGGTCCTACTTCACAGCGGTCTAGTACATCTGACAACAACTGTCAAGAGACACCCAGCACACCTGGAAGAACCTTAGCATCCAGTAATTGTCTGACAGGTCCTACAAATCGTGACATGAAACAGCAGGCGTCTGATCTTGCCTCATCTGGTTCTGTGGATACTTCTCTTTCCCCTCGTACGCCTCCTTTGCGGCCTCCCTCGACTAGTCGAGTTAAAGAAGTTTATGATTCCCCTCCCCACATGGATTCGCCTCCTAATCATATCTATCCTTCTCAATCAAGACACCAATCACAAGATAAAAGCCATTCACCTATTTCCAGACCTGCACCTGTTACTAAATTGTCACATGCTTTTCATAGTGAGTCACCTGTTGACCCTGTGTTGCATCCTCCAGTTTCATCAGCTACATCAATTCATCCATCCTCTCCACTTTCTTCCAAAACACCTACAAGTGAGATTCCACCTGTTAAAACAAGACTTGAGTCTTCCCCTCCACAACCTCCAACTCCACCTCCTCCTCCTACCCCTCCACTAAGAGATAAAAAACTAGTTAGAGCTGGACCTCCACCTCCACCACCTCCTCCACAGAAGGAACTACATGTTCGAGTTGAACCCATTCCTCCTCCTCCTCCTCCATCTTCTATTAATGAGAAGCCACATGTTAGCGATGGACCCCCTCCTCCCCCTCTGCCTCCTCTAATAGAGGAGCAATCTGTTAACTTTAAAACCCCACCTCCTCCGCCTCCTCCTCGTCTTTCTGGCGAACCTGCAGGTCCTACTGTGGCACCATCACCACTAGCTCCTCCCCCGCCACCACCACCAGCACCTTCTACCACCGCACCAGCTGCACCGCCACCTCCAATGCCCTTTGGTAAAGGAGGTGTAAAACCAAGTAATGCTTTTCCAGGGTCTCTTAATGTGTCAGACACAGTGGGACCTCAATCTAGTTCACCCACTGGTTCAAAGGGGAGAGTTTTATCACGTACAATCAGCTCAAGGAATAATACCAAAAAGTTGAAGCCATTACATTGGTTGAAACTATCTAAAGCAGTGCAAGGAAGTTTGTGGGATGAGACACAGAAATCTGGTGAAGCTTCCAAAGCCCCGGAGATTGATATGTCTGAGCTTGAGAGTCTCTTCTCAGCAGCAGTCCCAAGTTCAGGTGCCAAGAAGTCAAACACTCAAAGCTCTGCCAAGCCTAAATCTGATAAAGTGCAATTGATTGAGCACAGGCGAGCATATAATTGTGAAATCATGCTTTCAAAAGTGAAGGTGCCGTTGCATGATTTAATGAACTCAGTGCTAGAACTGGAAGAGTCAGCGCTAGACAGTGATCAGGTTGAGAACCTTATAAAGTTTTGTCCTACGAAAGAGGAGATGGAAATAATCAAGAGTTATGATGGGGAAAAGGAGAAGTTGGGGAGATGTGAACAGTTCTTCATGGCGTTGATGAAAGTACCCAGGGTAGAATCCAAGCTCAGAGTTTTTTCATTCAAGATTCAGTTCCACTCTCAGGTTTCGGACCTTAGAAATAGCTTGAATGTTGTGAATTCTGCTTCAGAAGAGATCAGGAATTCCGTCAAATTCAAGAGAATAATGCAAACAATACTTTCTCTAGGGAATGCTCTGAACCAAGGAACTACAAGGGGTTCTGCTATTGGATTCCGATTAGATAGCCTTCTCAAACTCACTGAGACACGTGCACGGAACAACAAGATGACTCTCATGCATTATCTATGTAAGGTGCTGGCTGACAAATTGCCCGAAGTTTTAGACTTCTCCAAAGATCTTACTCACCTAGACCCAGCAGCAAAGATCCAATTGAAGTTTCTGGCAGAGGAGATGCAAGCTATAAATAAAGGATTAGAGAAAGTTGTACAGGAATTGTCAACCTCTGAAAATGATGGTCCTATATCAGAAACTTTCCGCAAGAAATTGAAAGGGTTCCTGTGTTCTGCTGAAGCTGAAGTCCGTTCATTGGCTTCTCTATATTCTGGCGTGGGAAGGAACGTGGATGCACTGATTCTTTATTTTGGTGAAGATCCAACTCGCTGCCCATTTGAGCAAGTTGTCACAACTTTGCTCAACTTTACTAGAATGTTCAACAAAGCCCATGAAGAAAACTGCAAGCAACTAGAGCTTGAAATGAAGAAAACAGCAGATAGTGAGAAAAAAAAGTGTGAATCGGAAAGGATATTACCTACAGCAATCCGGACTGGCAATGTCAAATAA 3591 0.4442 MAMLRKLFFRKPPDGLLEICERVYVFDCCFTTEAWNEENYKVYIDGIVGQLRENSPDASILVFNFREEETKSQMANILSEYDITIMDYPRHYEGCPVLKMELIHHFLRSGESWLSLGHHNILLMHCESGGWPVLAFMLAALLIYRKVYTGEQRTLDMVYRQAPHELLRLLTPLYPIPSQLRYLQYVSRRNVALDWPPLDRALMLDCIILRIFPSFDGEGGCHPMFRIYGQDPFSADKSPKMLYSMPKKSKNVRAYKQGECELIKIDINCHIQGDVVIETINLNGDMDREMMMFRVMFNTAFVRSNILMLNRDEIDILWDAKDHFPKDFRAEILFSEMDAAAAVIANRTSCFEEKEGLPIEAFAKVQEIFNHVDWMDPKADAALNVLQQISASAIINDKVDTISEQHVETGTSSHEKGPKMPQGKSNEAMKSLSSNKQSPNNDTSRKEEKTNNDGPTSQRSSTSDNNCQETPSTPGRTLASSNCLTGPTNRDMKQQASDLASSGSVDTSLSPRTPPLRPPSTSRVKEVYDSPPHMDSPPNHIYPSQSRHQSQDKSHSPISRPAPVTKLSHAFHSESPVDPVLHPPVSSATSIHPSSPLSSKTPTSEIPPVKTRLESSPPQPPTPPPPPTPPLRDKKLVRAGPPPPPPPPQKELHVRVEPIPPPPPPSSINEKPHVSDGPPPPPLPPLIEEQSVNFKTPPPPPPPRLSGEPAGPTVAPSPLAPPPPPPPAPSTTAPAAPPPPMPFGKGGVKPSNAFPGSLNVSDTVGPQSSSPTGSKGRVLSRTISSRNNTKKLKPLHWLKLSKAVQGSLWDETQKSGEASKAPEIDMSELESLFSAAVPSSGAKKSNTQSSAKPKSDKVQLIEHRRAYNCEIMLSKVKVPLHDLMNSVLELEESALDSDQVENLIKFCPTKEEMEIIKSYDGEKEKLGRCEQFFMALMKVPRVESKLRVFSFKIQFHSQVSDLRNSLNVVNSASEEIRNSVKFKRIMQTILSLGNALNQGTTRGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKVLADKLPEVLDFSKDLTHLDPAAKIQLKFLAEEMQAINKGLEKVVQELSTSENDGPISETFRKKLKGFLCSAEAEVRSLASLYSGVGRNVDALILYFGEDPTRCPFEQVVTTLLNFTRMFNKAHEENCKQLELEMKKTADSEKKKCESERILPTAIRTGNVK* 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1789 1196 Coils Coil 1155 1175 - -
Lja4g1789 1196 MobiDBLite consensus disorder prediction 406 787 - -
Lja4g1789 1196 Pfam Formin Homology 2 Domain 786 1154 IPR015425 -
Lja4g1789 1196 Gene3D Formin, FH2 domain 781 1165 IPR042201 -
Lja4g1789 1196 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Lja4g1789 1196 MobiDBLite consensus disorder prediction 426 440 - -
Lja4g1789 1196 Coils Coil 1061 1081 - -
Lja4g1789 1196 Gene3D - 200 340 - -
Lja4g1789 1196 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Lja4g1789 1196 MobiDBLite consensus disorder prediction 454 511 - -
Lja4g1789 1196 SMART it6_source 782 1196 IPR015425 -
Lja4g1789 1196 SMART PTEN_C2_2 197 336 IPR014020 -
Lja4g1789 1196 MobiDBLite consensus disorder prediction 838 855 - -
Lja4g1789 1196 MobiDBLite consensus disorder prediction 539 558 - -
Lja4g1789 1196 MobiDBLite consensus disorder prediction 613 687 - -
Lja4g1789 1196 MobiDBLite consensus disorder prediction 836 857 - -
Lja4g1789 1196 MobiDBLite consensus disorder prediction 587 610 - -
Lja4g1789 1196 ProSiteProfiles Formin homology-2 (FH2) domain profile. 782 1180 IPR015425 -
Lja4g1789 1196 SUPERFAMILY Formin homology 2 domain (FH2 domain) 856 1174 - -
Lja4g1789 1196 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 202 337 IPR035892 -
Lja4g1789 1196 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Lja4g1789 1196 MobiDBLite consensus disorder prediction 694 745 - -
Lja4g1789 1196 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Lja4g1789 1196 MobiDBLite consensus disorder prediction 754 787 - -
Lja4g1789 1196 PANTHER FORMIN-J 683 1179 - -
Lja4g1789 1196 PANTHER FORMIN-J 1 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1789 Lja-Chr4 17325594 17335951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1789 1 400 Protein tyrosine phosphatase (PTP) family AT5G58160 67.581 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1789 - - lja:Lj4g3v1983370.1 1927.14