Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1784 ATGAGTTACCAAGACTCTCTACGACTCTTCACATTGAGGGCCTTTAAACCAAACACTCCCGTGGAAGGTTATGCAGACTTGGTAGAAGAGGTATTAAAATATGCTAAAGGGGTTCCATTAGCTCTCCAAGTCTTAGGCTCGCTGCTTTATGATAAAAAAAGGGAAGTATGGGAAAGTCTACTACAAAAGCTGCGAAAACTTCCCAATCGTCAAATTATCGATGTGTTGAAATTAAGTTATGATGGGCTGGATGATGAAGAGAAGGACATATTTCTTGACATTGCTTGCTTCTATGTAGGCCGGGTTGAGGATGCAGTAGTGGATTTCATAGATGCTTGTGGTTTCTCTGCTAAAGTTGGAATGGATGTTCTCAAAGATAGGCATCAACAATGTGCCAATGATCCTGGAAAACGTAGTCGTTTATGGGACTATGAAGATATTTACAATGTTTTAAAAAATAACAAGGGCACGGATGCAATCCAATGTATATTCCTCGACATGAGCACGAAAACTGTTGTTCAACTACATCCTGAGACTTTTAAAAGCATGCATAATCTGAGAATGTTTTGTTTGGATAGTCGTGATATTCAACCAAAAGTGACCCTTTCTGCATTTCTTGAAAGTCTTCCAGATGGTTTAAAATTGCTTCATTGGGTTGGGTTTCCTCAAAGATCCTTGCCGCTTTGTCCTGAAAATCTTGTTGAACTTAAAATGCGTCATAGCAAGCTTGAACAACTTTGGGAGGATGATCAGGAATTACCGAATTTGAAAAGGCTTGATCTTGGGGGTTCTAAGCAGTTGGTTCGAATACCAGACCTTTCAAAGTTCCCAAATATTGAAGATATAGTTCTTAGTGGTTGTGCAAGCTTAATTGAAGTTTACTCATCAAGTTTCCTCAGCAAACTCAAATGTTTAAAGTTAAGGAGGTGTGTTGAGCTTACAAGTTTAAATGTTCCTAGCAATATTCTATCGAGATCTTCTGGACTAGTGGAGCTCTCTAACTGTCGCAAGCTAAAAACGTTGTCAATCAACAGAACCAAGGTGGTTGAATCGCATTTTGATGGATCTTCCTATGAGCCTTGTTGTTTGATGCTCCATAATTGTGAATCGCTTACAAGCCTTCGAATCGACCTTTGTCGGTCAAAATTGCTGCAAAAACTTTGTCTGAAACTACCTTCATCCTTGCATCGCTTTGTGGGGCTTCAAGAATTGAGCTTGCGTAATTGCTCAAGGCTTGAGATTATTCCTTGTTCCATTGGAAGACTCACCAAACTCCGCAGCTTAGACCTTACCGGTTGTGAATCACTTGAAACATTTCCAAGTAGCATTTTCAAATTAAAGTTGACAAAACTCGATTTGGATGGTTGCTCAAAGCTAAAGACATTCCCAAAAATCTTGGAGCCTGCAGAAAGTTTTGCTGACATTAACTTACCATATACAGCAATTAAAGAACTGCCTTCATCTTTGGACTTCTTGGTGGGTCTTCAAACCTTGTGTCTGTATGGGTGTCGTAATCTGGAGTCACTTCCAAACAGCATTTGCAATCTAAAGCTTCTATCTAAGCTTGACTGTTCAGGTTGTCGCAACTTAACAGAAATCCCAAATGACATTGGCCGCTTGTCATCATTAAGGAACTTGCAACTGCATCGTACCAAAATTGTGAACTTCCCAGAGAGCATTGGTCATCTTTCAAGCTTGGAATCACTTAATGCAAGTTATACCGGAATTGTGAACCTTCCAGAGAGTATTGCTCATCTTTCAAGCTTGAACTCACTTAATGTAAGTTATTCCGAAATTGTGAACCTTCCAGAGAGCATGGGTCATCTTTCAAGCTTGAAATCACTTAATGTAAGTTATACTGGAGTTGTGAACCTTCCAGAGAGTATTGCTCATCTTTCAACCTTGAAATCACTTAATGTCAGTGGTTGCAGAAAGCTTGAATGTATCCCAAAACTTCCACCATTTCTGAAATGGTTATTGGCATTTGATTGCCCATCCATTACAAGAGTGATTTCAAATTCAACGTTCAAACACCCTTCAGATTCCAAAGAAGGTACCTTCCAATTTCATTTCACCAGTAATGAAGATCAGGATCCAAGTGCTTTCAATACTATAAAACCTTGGCTGATCAAAGAAAAAGAAATAATAATAATTACTATAAAACGGCTAAGGTGCTTCTATCTTCGGTTACAGAGAATACACAATACTAGGCCTCTGTATAAGATGAAACAATAA 2235 0.3893 MSYQDSLRLFTLRAFKPNTPVEGYADLVEEVLKYAKGVPLALQVLGSLLYDKKREVWESLLQKLRKLPNRQIIDVLKLSYDGLDDEEKDIFLDIACFYVGRVEDAVVDFIDACGFSAKVGMDVLKDRHQQCANDPGKRSRLWDYEDIYNVLKNNKGTDAIQCIFLDMSTKTVVQLHPETFKSMHNLRMFCLDSRDIQPKVTLSAFLESLPDGLKLLHWVGFPQRSLPLCPENLVELKMRHSKLEQLWEDDQELPNLKRLDLGGSKQLVRIPDLSKFPNIEDIVLSGCASLIEVYSSSFLSKLKCLKLRRCVELTSLNVPSNILSRSSGLVELSNCRKLKTLSINRTKVVESHFDGSSYEPCCLMLHNCESLTSLRIDLCRSKLLQKLCLKLPSSLHRFVGLQELSLRNCSRLEIIPCSIGRLTKLRSLDLTGCESLETFPSSIFKLKLTKLDLDGCSKLKTFPKILEPAESFADINLPYTAIKELPSSLDFLVGLQTLCLYGCRNLESLPNSICNLKLLSKLDCSGCRNLTEIPNDIGRLSSLRNLQLHRTKIVNFPESIGHLSSLESLNASYTGIVNLPESIAHLSSLNSLNVSYSEIVNLPESMGHLSSLKSLNVSYTGVVNLPESIAHLSTLKSLNVSGCRKLECIPKLPPFLKWLLAFDCPSITRVISNSTFKHPSDSKEGTFQFHFTSNEDQDPSAFNTIKPWLIKEKEIIIITIKRLRCFYLRLQRIHNTRPLYKMKQ* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1784 744 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 400 581 IPR044974 GO:0006952
Lja4g1784 744 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 129 381 IPR044974 GO:0006952
Lja4g1784 744 SUPERFAMILY L domain-like 448 672 - -
Lja4g1784 744 Gene3D - 1 84 IPR042197 -
Lja4g1784 744 SUPERFAMILY "Winged helix" DNA-binding domain 71 152 IPR036390 -
Lja4g1784 744 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 518 654 - -
Lja4g1784 744 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 129 381 - -
Lja4g1784 744 PRINTS Disease resistance protein signature 35 49 - -
Lja4g1784 744 PRINTS Disease resistance protein signature 420 436 - -
Lja4g1784 744 Gene3D Ribonuclease Inhibitor 151 347 IPR032675 -
Lja4g1784 744 Gene3D Ribonuclease Inhibitor 472 670 IPR032675 -
Lja4g1784 744 Pfam Leucine Rich Repeat 232 251 IPR011713 -
Lja4g1784 744 SUPERFAMILY L domain-like 164 471 - -
Lja4g1784 744 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 518 654 IPR044974 GO:0006952
Lja4g1784 744 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 3 127 - -
Lja4g1784 744 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 400 581 - -
Lja4g1784 744 SMART LRR_bac_2 563 582 - -
Lja4g1784 744 SMART LRR_bac_2 632 652 - -
Lja4g1784 744 SMART LRR_bac_2 253 273 - -
Lja4g1784 744 SMART LRR_bac_2 609 628 - -
Lja4g1784 744 SMART LRR_bac_2 586 605 - -
Lja4g1784 744 Gene3D Ribonuclease Inhibitor 350 471 IPR032675 -
Lja4g1784 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 94 IPR027417 -
Lja4g1784 744 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 127 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1784 Lja-Chr4 17274714 17278594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1784 390 569 WRKY Transcription Factor Family AT4G12020 39.444 1.18e-20 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1784 - - lja:Lj3g3v0423790.1 753.051