Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1781 ATGTCGAAAGAGACAGCTGGACCTCCTGAGAAGGAAATTATTGCAAGAGAAGCAGTCCAGGCACCTCCATCCCAGACAGAATATCAGCTTCAGGTGTCTGTGTGCTCAACGCCATTGTCTGAACTGTCAACAAATTCTGTTACTCAATCTTCCCGTAAACAAAAAATGACTCCCAGGAGGATGAATAATAATACACATGAGGCACAAGTAGACAAGAAAATTCCTTCTGGTGGTAAAAGCTTATCTGCTGTTTCTGTTGCAAGGACATCAGCATCTGATGGATACAACTGGCGGAAGTATGGTCAAAAGCAAGTAAAGAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTTCTCATTCAGACTGTTCTGTTAAAAAGATTGAACGCTGTGATCATTCAGGTCATGTGATAGAAATTGTTTATAAAAGTGAACACAGTCACGATCCCCCACGGAAAACTAATTCCAGTAGGGAAAGCAAGTTTGTGTCTTCAAATGAACCTACTGTAGAGAATAGTGTTCCAAAGAAGCCTATCAGAGTTCTGAAGGATTCTGATCTGTCCATTTCTTCGAAAGATATACAAGCACCTTGGAGTGGTGATAAGAAACGACAAACCTTGTCAAATATCAGTGATAATGGACAAATTATTTTGAAGGAGGAACATGTAAATGAGCCAGAGCAAAAACGAAGAATGAAGAAAAGTGACTTAACAAACTTGGATTCTCCTGTAAAACCTGAAAAGAAAGCCAAGTTTGTTGTACATGCAGCAGGGGACGTGGGGATATCAGGTGATGGATACCGATGGCGCAAGTATGGACAGAAAATGGTGAAGGGGAATCCAAATCCCAGAAACTACTACAGATGCACTTCTGCTGGATGTCCTGTCCGAAAGCACATTGAGACTGCTGTAGATAACTCAGATGCTGTCATCATAACATACAAGGGTGTGCATGACCATGAAATGCCTGTGCCCAAGAAACGACATGGTCCCCTAAGAGCTCCTTTTGTGGCTGATGCTGCACCTGCCGCCATGAATAATTTGCCGTCAAAGAATCCCGACTCGCTGCAAAACCAGAAAGCTTCTACTCAATGGTCAGTGGACACAGAAGGTGAACTAACAGGGGAAGCCATGGAACTTGGGGGTGAGAAAGCAATGGAGTCAGCTCGAACGCTTCTGAGCATAGGCTTTGAAATTAAGCCTTGCTGA 1206 0.4328 MSKETAGPPEKEIIAREAVQAPPSQTEYQLQVSVCSTPLSELSTNSVTQSSRKQKMTPRRMNNNTHEAQVDKKIPSGGKSLSAVSVARTSASDGYNWRKYGQKQVKSPTGSRSYYRCSHSDCSVKKIERCDHSGHVIEIVYKSEHSHDPPRKTNSSRESKFVSSNEPTVENSVPKKPIRVLKDSDLSISSKDIQAPWSGDKKRQTLSNISDNGQIILKEEHVNEPEQKRRMKKSDLTNLDSPVKPEKKAKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHEMPVPKKRHGPLRAPFVADAAPAAMNNLPSKNPDSLQNQKASTQWSVDTEGELTGEAMELGGEKAMESARTLLSIGFEIKPC* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1781 401 MobiDBLite consensus disorder prediction 1 25 - -
Lja4g1781 401 MobiDBLite consensus disorder prediction 41 70 - -
Lja4g1781 401 ProSiteProfiles WRKY domain profile. 257 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g1781 401 MobiDBLite consensus disorder prediction 142 172 - -
Lja4g1781 401 SMART WRKY_cls 91 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g1781 401 SMART WRKY_cls 262 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g1781 401 MobiDBLite consensus disorder prediction 41 81 - -
Lja4g1781 401 SUPERFAMILY WRKY DNA-binding domain 88 150 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g1781 401 MobiDBLite consensus disorder prediction 156 171 - -
Lja4g1781 401 Pfam WRKY DNA -binding domain 93 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g1781 401 Pfam WRKY DNA -binding domain 264 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g1781 401 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 3 399 IPR044810 GO:0003700
Lja4g1781 401 MobiDBLite consensus disorder prediction 219 242 - -
Lja4g1781 401 SUPERFAMILY WRKY DNA-binding domain 258 322 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g1781 401 ProSiteProfiles WRKY domain profile. 86 150 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g1781 401 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 3 399 - -
Lja4g1781 401 Gene3D WRKY domain 247 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g1781 401 Gene3D WRKY domain 77 151 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1781 Lja-Chr4 17257575 17261602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1781 81 401 WRKY Transcription Factor Family AT4G30935 57.669 3.69e-118 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja4g1781 WRKY 2.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1781 - - gmx:100782194 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1781 4 17257575 17261602 Lja4g1781 4 17257575 17261602 ECH