Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1776 ATGTTTGACAGCGGTCACAAATCAGAATACATGGGTGGCCAGAGGGAAACTTTTTTGAGGTTGGATGACTTTGATCCTAGACTGTCTGCATCTTCTAATGCTGGAGTTATGAAATCTGGATTTGGTATTGATAAATTAAGCCATGGTGGTCATGGAAGCAGCCCAACCTCTAGGTCTTTTAAAAGAGGAATGAGAAAGGGATCTGAAGGACTGAAGTCACTTGGTCGGTCACTTGGATTGGGGGTATCTAGGGCGGTGTTCCCGGAAGATCTTAAAGTGTCAGAAAAGAAGATATTTGATCCTCAAGACAAATTCTTGCTCTTATTGAACAAGTTTTTTGTTGTCTCATGCATTTTATCTGTGTCTGTGGATCCACTGTTTTTTTATCTCCCTGTTATCAATGATCGATTACACTGTCTTGGAATAGACCGAAAGTTGGCAACGATAGTTACCACCTTAAGGACAGTCATTGATGCTTTCTATCTTATACACATGGCTCTCCAATTCCGAACTGCTTATATTGCTCCGTCATCTCGTGTCTTTGGGCGGGGTGAGCTTGTGATAGATTCAGGACAGATAGCCAGGCGATACTTGCAGCGGTATTTCATCATTGATTTCCTGTCTGTGGTGCCGATACCTCAGATTGTGGTTTGGAGATTTCTTCAGACGTCAAAAAGTTCAGACGTACTAGCAACAAAGCGGGCCTTGTTTTTCGTTATCTTGCTTCAATATGTTCCTAGATTTCTTCGAATGGTACCATTGACTTCAGAACTTAAGAGAACAGCCGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCAGCATATTATTTGCTGTTGTACATGCTTGCTAGTCATATAGTTGGTGCTTTTTGGTACTTGTTAGCTATTGAGCGCAATGACTCATGCTGGCAGAAAGCTTGCAGTGAGAATGGGTGCAACCAAAACTTCCTGTATTGTGGCAGTGAGCATGCAGACGGTTATACTGCCTGGCAGAATAGAAGTGAAGCTATTCTTAAGTCAAAGTGCTCTGCAGATGTTGATCCTCCACCTTTTGATTATGGAATTTTTGAACAAGCCCTGTCATCTGGTATAATTTCATCTAAAAAGTTCGTCTCCAAATACTGTTACTGTTTATGGTGGGGGCTCCAAAATTTGAGTACACTTGGTCAGGGGCTTCAAACTAGCACCTACCCTTGGGAGGTTATCTTTTCAATAACACTAGCTATATTTGGCCTCATCCTTTTTGCACTTCTAATTGGCAACATGCAGACATATCTTCAATCTCTTACCATTAGGCTCGAGGAAATGAGAGTCAAAAGGCGTGACTCGGAACAGTGGATGCATCATCGCTTACTCCCACCAGAGCTTAGAGAGCGTGTGAGACGATATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGATGAAGACTGTTTAGTTCAGAGTCTACCAAAGGATCTTCGAAGAGATATTAAGCGTCATCTGTGTTTGGCTTTAGTGAGGAGGGTTCCGTTGTTTGAGAGCATGGATGAGAGACTGCTTGATGCCATATGTGAGAGACTTAAACCAAGTTTATTTACAGAGCATACTTACATTGTCCGGGAAGGAGATCCTGTTGATGAGATGCTTTTCATCATACGTGGTCGCCTTGAGAGTGTTACCACAGATGGTGGGAGGAGCGGATTCTTCAACCGTGGTTTTCTAAAAGAAGCTGATTTCTGTGGGGAGGAGCTTTTAACTTGGGCCCTGGACCCCAGATCTGGTTCTAATCTCCCAACTTCTACTCGAACAGTAAAGGCATTAACAGAGGTTGAGGCTTTTGCCTTAACTGCAGATGAGTTAAAATTTGTTGCGAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACTTTCCGCTTTTACTCGCAACAATGGAGAACTTGGGCTGCGTGCTTTATCCAAGCTGCATGGCGTCGATATTGTAAAAAGAAAATTCTGAAGCTTCGTCAAAAGGAAGAAGCTGATGAGTCAGAAGGAACTCATGACAATGCTAGTGGCATTTCCTCCAGCCTGGGTGCGACCTTGTTAGCCTCAAAGTTTGCGGCACGCACACTTCGTGGTGTGCATCGCAATCGACTTGCTAAAACGGCAAGGGAGTTAGTAAAACTACAAAAACCCCCCGAGCCTGACTTTACAGCAGATGATGCTGACTAA 2199 0.4366 MFDSGHKSEYMGGQRETFLRLDDFDPRLSASSNAGVMKSGFGIDKLSHGGHGSSPTSRSFKRGMRKGSEGLKSLGRSLGLGVSRAVFPEDLKVSEKKIFDPQDKFLLLLNKFFVVSCILSVSVDPLFFYLPVINDRLHCLGIDRKLATIVTTLRTVIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDSGQIARRYLQRYFIIDFLSVVPIPQIVVWRFLQTSKSSDVLATKRALFFVILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDSCWQKACSENGCNQNFLYCGSEHADGYTAWQNRSEAILKSKCSADVDPPPFDYGIFEQALSSGIISSKKFVSKYCYCLWWGLQNLSTLGQGLQTSTYPWEVIFSITLAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPPELRERVRRYDQYKWLATRGVDEDCLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPSLFTEHTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPRSGSNLPTSTRTVKALTEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKKKILKLRQKEEADESEGTHDNASGISSSLGATLLASKFAARTLRGVHRNRLAKTARELVKLQKPPEPDFTADDAD* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1776 732 SUPERFAMILY Voltage-gated potassium channels 101 427 - -
Lja4g1776 732 Gene3D Jelly Rolls 503 623 IPR014710 -
Lja4g1776 732 MobiDBLite consensus disorder prediction 713 732 - -
Lja4g1776 732 SMART cnmp_10 505 636 IPR000595 -
Lja4g1776 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 13 729 - -
Lja4g1776 732 Pfam Cyclic nucleotide-binding domain 526 616 IPR000595 -
Lja4g1776 732 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
Lja4g1776 732 Pfam Ion transport protein 109 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja4g1776 732 Gene3D - 112 430 - -
Lja4g1776 732 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 13 729 - -
Lja4g1776 732 Gene3D Helix hairpin bin 433 496 - -
Lja4g1776 732 CDD CAP_ED 505 636 IPR000595 -
Lja4g1776 732 ProSiteProfiles cAMP/cGMP binding motif profile. 505 589 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1776 Lja-Chr4 17225700 17234797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1776 1 730 Ion Channels AT2G23980 74.667 0.0 1133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1776 K05391 - gmx:100784327 1235.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1776 4 17225700 17234797 Lja4g1776 4 17225700 17234797 ECH